KEGG   Brassica oleracea (wild cabbage): 106317504
Entry
106317504         CDS       T04124                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106317504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:boe03041]
    106317504
   03036 Chromosome and associated proteins [BR:boe03036]
    106317504
Spliceosome [BR:boe03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    106317504
 Complex B
    106317504
 Complex C
   U2 SnRNP specific factors
    106317504
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    106317504
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N TIP120
Other DBs
NCBI-GeneID: 106317504
NCBI-ProteinID: XP_013610766
UniProt: A0A0D3E251
LinkDB
Position
C9:5392646..5396813
AA seq 1266 aa
MADLDPEIAKTQEERRKIEAELASLTSVNFDRDLYGGNDRDSYVTSIAPNDEEDSNLDAT
GSLVAQRLASYTAPKSILNDVARAHVEDDDGGFKPRQTIAEREGDYRNRRLNRVLSPDRV
DPFAMGEKTPDPSVRTYNDHMRETAVQREREETMRLIAKKKKEAEEAAKEQKDSAPAASS
KRRNRWDHAEEDGGGGKKAKASDSDWDVAESAPGIGKWDATPGRAGDATPSAGRRGRNRW
DETPTPGRVTDSDATPGGGVTPGATPSGVTWDATPKGSATPTPKRQRSRWDETPATMGSA
TPMGGMTPTAAYTPGVTPFGGIDMATPTPSQLNLRGAMTPEQYNLARWEKDIEERNRPLS
DEELDAMFPTEGYKVLDPPASYVPVRTPARKAMGTPTPMTTPGYVIPEEHRGQQFDVPQE
LPDGLPFMKPEDYQYFAALLNEENEEELSPDEQKERKIMKLLLKVKNGTPAQRKTALRQL
TDKARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPFVHKILVVIE
PLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL
GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQ
KVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDA
IYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRSDILPEFFKHFW
VRRMALEKRNYKQLVETTVEIANKVGVADIVARVVEDLKDESEPYRRMVMETIDKVITNL
GASDIDSRLEELLIDGILYAFQEQTTDDTNVMLNGFGAVVNGLGQRVKPYLPQICGTIKW
RLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRI
CFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMR
VALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRP
ELTMFV
NT seq 3801 nt   +upstreamnt  +downstreamnt
atggcggatctagatccagagatcgctaaaactcaggaagagaggcgtaagatcgaagca
gagctcgcttccctcacttccgtgaacttcgatcgcgatctctacggaggcaacgaccgt
gattcctatgtaacctccatcgcgccgaacgacgaggaggattcgaatctggacgccacc
ggctccctcgtggctcagcgtctcgcctcttacaccgctcccaagtctatcctcaacgac
gtggctcgcgctcacgtcgaggatgacgacggagggttcaagcctaggcagactatcgcg
gagcgcgagggtgattatcgtaacaggaggcttaaccgagttttatctccggatagagtt
gatccgtttgctatgggggagaagactccggatccgagtgttaggacttataatgatcat
atgagggagacggctgtgcagagggagagggaggagactatgaggcttattgctaagaag
aagaaagaagcggaggaagctgccaaggagcagaaagactctgctcctgctgcttcttcc
aagaggaggaacagatgggaccatgctgaagaagatggtggtggtggaaagaaagctaaa
gcttcggattcggattgggatgtagctgaatcagctcctgggattgggaaatgggacgca
actccagggagagctggtgatgccacaccatctgctggaaggagggggaggaacagatgg
gacgagactcctactcctggacgtgtgactgattccgatgcaacaccaggtgggggtgtt
actccaggtgcaactccttcaggtgttacttgggacgcgactccgaaagggtctgctacg
ccaacaccgaagcgtcaacgttctaggtgggatgagacacctgccactatgggaagtgct
acacctatgggtggaatgactcctactgctgcttacactcctggtgtcactccgtttggg
ggaattgatatggctactccaactccgagtcagcttaatctgcgtggtgctatgactccg
gagcagtacaatttggcgaggtgggagaaggatattgaagagagaaacagaccgttgagt
gatgaagaacttgatgccatgtttcctacagaaggatacaaggtgttggacccgcctgct
tcttatgttcctgtcagaacccctgctaggaaggctatgggaaccccgacacccatgaca
actcctggctacgttatccccgaggaacaccgtgggcagcagtttgatgtgcctcaggag
cttcctgatgggctgccgtttatgaaaccagaggattatcagtattttgcagcgctgttg
aatgaagagaacgaagaagagctgtctcctgacgagcagaaagaacgcaagatcatgaaa
ctgttgctcaaggtcaaaaacggaacgcctgctcagaggaaaacagctctaaggcagctt
actgataaggctcgtgagcttggtgctggtcctttgtttaataaaatcctgccgttgctc
atgcaaccaactttggaagatcaagagaggcatcttttggtgaaagtaattgataggatt
ctgtacaaacttgatgagctggtgaggcccttcgtccacaagattctggttgttattgag
cccttgctgattgatgaagattactatgctcgtgttgaagggagagaaattatttcgaac
cttagcaaagcagcaggcttagccacgatgattgcagctatgcgtcccgatatagacaac
attgatgagtatgtgaggaacacaacagcaagagctttcagtgtggtggcttcagctctt
ggaatccctgcactcttgccgttcctgaaagccgtttgccagagtaagaagtcatggcag
gcgcggcacactgggattaagattgtccagcagattgccatactaatcggctgtgctgtt
ttacctcatttgaggtctctggtggaaattatcgaacatggtctcagtgatgaaaatcag
aaggttaggaccattacggccttatcgctggctgctcttgccgaagctgctgctccttat
ggtatcgagagctttgactctgttctgaagcctctgtggaaaggtattaggtctcaccgt
ggaaaagtcttggctgcgttcttgaaggcgattggttttatcattcccttgatggatgct
atatacgcgagctattacacaaaagaagtgatggttatccttattcgcgagttccagtca
cctgatgaagagatgaagaagattgtcctcaaggtggtgaaacagtgtgtaagcacagaa
ggggttgaaccggattacatccgcagcgatattctgcctgagtttttcaagcatttctgg
gttaggagaatggctctagagaagagaaactataagcagcttgttgaaactacagttgag
attgcgaacaaggttggcgttgctgatatcgtggcgagggttgttgaagatcttaaagac
gagagtgaaccctaccgccgtatggttatggaaaccattgacaaggttatcacaaacttg
ggagcatctgatattgattcgagattggaggagctgctcatagatggcattctttatgct
ttccaagagcagacaaccgacgatactaacgtgatgcttaatgggttcggtgctgtggtg
aatggtcttggtcagcgagtgaagccttaccttcctcagatctgtggtaccatcaagtgg
agattaaacaacaagagtgcaaaggtgagacaacaagccgctgatcttatttccagaatt
gctgttgtgatgaagcagtgtggagaggaacagttgatgggacatctaggtgttgttttg
tacgagtatctcggagaagagtaccctgaagtcttgggatcaattcttggagctctaaaa
gcaattgtcaacgtgattggtatgacaaagatgactcctcctattaaggatctgcttcca
agactgactcccattttgaagaacaggcatgagaaagtgcaagagaattgtatcgacctt
gttggtagaattgctgatcgtggtgctgagtttgttccagcgagggaatggatgagaatc
tgtttcgagcttcttgagatgctcaaagctcataagaaaggtattcgacgtgccactgtc
aacactttcgggtacatagccaaagccattggaccgcaagacgttctagccacgttactg
aacaatctcaaagtccaagagcggcagaaccgtgtctgcaccacagtcgcaatcgccata
gtcgctgaaacgtgctctccgtttactgtcttgcccgctctgatgaacgagtaccgtgtt
ccagagctcaacgtccaaaacggtgtcctcaaatccctctctttcctcttcgagtacatt
ggagaaatgggcaaggattacatatacgcggtcacgccgttgctcgaagacgcgctcatg
gacagagacttggttcacagacaaaccgcagcttcagcagtgaaacacatggcgttaggt
gtagcgggtctgggatgcgaagacgctttggttcacttgctcaacttcatctggcccaac
atcttcgagacatctcctcacgttatcaacgctgtgatggaagcaattgaaggaatgaga
gtcgcgctgggtgcagcagttatactgaactattgtctgcagggtttgtttcatccggct
cgcaaagtccgtgaggtgtattggaagatttacaattcgctctacattggtgctcaggac
acgcttgttgctgcttacccggtccttgaagacgagcagaacaatgtttatagccgacca
gagttaacgatgtttgtgtga

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