Brassica oleracea (wild cabbage): 106317538
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Entry
106317538 CDS
T04124
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
boe04141
Protein processing in endoplasmic reticulum
boe04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106317538
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106317538
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106317538
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
boe01009
]
106317538
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106317538
03009 Ribosome biogenesis [BR:
boe03009
]
106317538
03110 Chaperones and folding catalysts [BR:
boe03110
]
106317538
04131 Membrane trafficking [BR:
boe04131
]
106317538
03051 Proteasome [BR:
boe03051
]
106317538
03029 Mitochondrial biogenesis [BR:
boe03029
]
106317538
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
boe04147
]
106317538
Protein phosphatases and associated proteins [BR:
boe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
106317538
Spliceosome [BR:
boe03041
]
Complex B
Other components
Prp19 complex
106317538
Complex C
Prp19-CDC5 complex
106317538
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
106317538
Chaperones and folding catalysts [BR:
boe03110
]
Heat shock proteins
HSP70 / DNAK
106317538
Membrane trafficking [BR:
boe04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
106317538
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
106317538
Proteasome [BR:
boe03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
106317538
Mitochondrial biogenesis [BR:
boe03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
106317538
Exosome [BR:
boe04147
]
Exosomal proteins
Proteins found in most exosomes
106317538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
DACNG
Motif
Other DBs
NCBI-GeneID:
106317538
NCBI-ProteinID:
XP_013610798
UniProt:
A0A0D3EIB5
LinkDB
All DBs
Position
C9:54268605..54271126
Genome browser
AA seq
646 aa
AA seq
DB search
MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDSSVQSDMKLWPFKIIAGPAEKPMIVVNYKGEEKQFAA
EEISSMVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
SALTRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
ARNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDDIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDAIEQAIQWLENNQLGEADEFED
KMKELESICNPIIAKMYQGAGGEAAGMDDDAPPASGGAGPKIEEVD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtaaaggagaaggtccagcgatcggtatcgatctcggtacgacgtactcttgc
gtcggagtgtggcaacacgaccgcgttgagatcatcgctaatgatcaaggtaacaggacc
acgccgtcttacgtcgctttcactgactccgagaggctcatcggtgatgccgctaagaac
caggtcgccatgaaccctatcaacaccgtcttcgatgctaagaggttgatcggtcgtcgt
ttcagcgacagctctgtacagagcgacatgaagctgtggccattcaagatcatcgcagga
cctgccgagaagccaatgatcgtagtcaactacaagggcgaggagaagcagtttgccgcc
gaggagatttcctccatggttctcatcaagatgcgtgagattgcagaggcttaccttggc
gtcaccatcaagaacgcagtcgtcactgtccctgcctacttcaacgactctcagcgtcag
gctactaaagacgctggtgtgattgccggtttgaacgttatgcgtatcatcaacgagccc
accgctgctgctattgcctacggtcttgacaagaaggcaaccagcgttggagagaagaac
gtgttgatctttgatcttggtggtggtacttttgatgtctcccttctcactattgaggaa
ggtatctttgaggttaaggcgactgctggagatactcatcttggtggtgaggacttcgac
aacagaatggtgaaccactttgttcaggagtttaagaggaagagcaagaaggacattacc
ggaaacccaagagctcttaggaggttgaggacggcctgtgagagagcaaagaggactctt
tcctccactgctcaaaccaccatcgagattgactctctctttgagggtattgacttctac
tctgcactcacccgtgctagattcgaggagctcaacatggatctctttaggaagtgtatg
gagccagtggagaagtgtctccgtgatgctaagatggacaagagcaccgtccacgatgtt
gtccttgtcggtggctccacccgtattcccaaggttcagcaattgcttcaggacttcttc
aacggcaaagagctttgcaagtctatcaaccccgacgaggccgttgcttacggtgctgcc
gtccagggagctattctcagtggtgaaggaaacgagaaggtccaagatcttctcttgctc
gatgtcactcctctctcactcggtcttgagacagccggtggtgtcatgaccactttgatc
gcaagaaacacaaccattccgaccaagaaggagcaagtgttctcgacctactcggacaac
cagccaggagtgttgatccaggtgttcgaaggggagagagccaggaccaaggacaacaac
ctcctcggtaagtttgagctctccggaattcctccggctccacgtggtgtccctcagatc
actgtctgcttcgacattgacgccaacggtatcctcaacgtctctgctgaggacaagacc
accggacagaagaacaagatcaccatcaccaacgacaagggtcgtttgtccaaggacgat
atcgagaagatggtccaagaggctgagaagtacaagtctgaggatgaggagcacaagaag
aaggtggaagccaagaacgctctcgagaactacgcgtacaacatgaggaacaccatccag
gacgagaagattggtgagaagctaccggctgcagacaagaagaagatcgaggacgctatt
gagcaggcgattcagtggctggagaacaatcagctgggtgaggctgatgagttcgaagac
aagatgaaggagttggagagcatctgcaacccaatcattgccaagatgtaccaaggagct
ggtggtgaagccgcagggatggacgatgatgctcctcctgcctcaggcggtgctggccct
aagatcgaagaggtcgactaa
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