Brassica oleracea (wild cabbage): 106317849
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Entry
106317849 CDS
T04124
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106317849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
boe03009
]
106317849
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106317849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Utp13
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Nup120_160
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_WDR75_2nd
Beta-prop_HPS5
WD40_like
Beta-prop_Vps41
PROPPIN
Ge1_WD40
Nbas_N
Beta-prop_RIG_1st
Beta-prop_NOL10_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
106317849
NCBI-ProteinID:
XP_013611087
UniProt:
A0A0D3EEY3
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Position
C9:47736463..47741223
Genome browser
AA seq
879 aa
AA seq
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MAPQSLKKNYKCSRSLKQFYSGGPFIVSSDGSFIACACGDAINIVDALDSSVKSTIEGES
DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRTWKGHEGPVMGMAVHASGGLLATA
GSDRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDADKNILISGSDDATVRVWDLLAKNT
EKKCLAILDKHFSAVTSIALSEDGWTLLTAGRDKVVNVWDLHDYSCKTTVATYEVLEAVT
PVSSGTPFASFVASLDKKTKKKKTLSQETHFITLGERGVVRIWKSEGSVCLYEQKSSDIT
VSSDDEESKRGFTAAAMLPSDRGLLCVTADQQFFTYSVVENAEESELVLSKRLVGYNEEI
SDMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVT
GSKDKTVRLWNATSQSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGVSE
DSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHK
RRIFSVEFSPVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSC
GADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMVATGGGDAVINLWHDSTASDKE
DEFRKEEETILRGQELENAVLDAEYTKAIRLAFELRRPHKVYELFAGLCKKRESDDQIVK
ALQGLEKEEFRLLFEYLREWNTKPNRCHIAQFVLYQTFNILPPTEIVQVKGIGELLEGLI
PYSQRHFNRMDRFVRSSFLLDYTLGEMSVIDPETETETEYRKDKKMEEVKVIASVSAMEQ
DSEGIDQKTPSRKRKSQKSKDKSNKKRLVAEAQGNVITV
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcagtcgttgaagaagaactacaagtgctctcgttctctaaagcagttctac
agcggcggtcctttcatcgtttcgtctgacggttcttttatcgcctgtgcttgtggtgat
gcgattaacatcgtcgacgcgttggactcgtcggtgaaatcgacaatcgaaggcgagtcg
gatacgctcactgccttggctcttagtcctgacgataagctgctattctccgctgggcat
agtagacagattcgagtttgggatttggaaacgttgaaatgcattcgcacttggaaggga
cacgaggggcctgtgatgggaatggctgtccacgcatctggtggattgttagctacagct
ggatctgataggaaagtgcttgtttgggatgttgatggtggtttctgcactcattatttc
aaaggtcataaaggagttgtttcaagtatcttgttccatcctgatgctgacaaaaacatt
cttatatcgggaagtgatgatgctactgttcgtgtctgggatcttttggcgaagaatact
gagaagaaatgtcttgccattttggataagcacttttcagctgtgacttccattgctctg
tcagaggatggatggactttactcactgctggaagagataaagttgtgaatgtgtgggac
cttcatgattatagctgcaagactacagttgcaacatatgaggtactagaagctgtgaca
ccagtttcttctggaacacctttcgcttcatttgtagcttctcttgataagaagactaag
aagaagaaaactctttctcaagaaacgcactttattactctcggggaacgtggtgtggtg
cgcatttggaagtctgaaggttcagtttgcctctacgagcagaagtcgtcggatatcact
gtcagctcggatgatgaggaatctaaaagagggttcactgcagctgctatgttgccttct
gatcgtggactgctttgtgtgactgctgatcagcagttttttacctactccgttgtggaa
aatgcagaagaatcagaattagtgctaagcaagaggcttgttggatataacgaagaaata
tctgatatgaagttcctaggtgatgaagaacagttcctcgcagtagctacaaatctcgag
gaggttcgtgtttatgatgtagcaacgatgtcatgttcgtacgttttagctggccataaa
gaagttgttctgtctcttgacacatgcgtatctagttctgggaatgtgctgatcgtgacc
ggaagtaaagacaaaactgtaaggctatggaatgcaaccagccaatcttgcattggagtt
ggtacaggtcataacggcgatatcttagcggttgcttttgcgaagaaatctttcagtttc
tttgtcagtggcagtggtgatcgtacactgaaggtttggagccttgatggggtctcagag
gactcggaagagcccattaatctgaaaactagaagtgttgttgctgcccacgataaagac
atcaattctgtggctgttgctcgtaatgatagcttggtttgcactggctctgaggatcgg
acagctagcatatggaggctaccagacttggtgcatgttgttacacttaaaggacataag
aggcggatattttctgttgagttctcacctgttgatcaatgcgtaatgacagcatcaggt
gataaaacagtaaaaatttgggcaatatctgacggttcatgcctcaaaacattcgaaggt
cacacctcaagtgtccttagagcctcattcataactgacggcacccaatttgtctcatgt
ggtgccgatggtttattgaaactttggaatgtgaacactagcgaatgcattgccacatat
gaccagcacgaggataaggtgtgggctttagctgttggaaagaaaacagaaatggttgca
accggtggaggcgatgcagttattaatttatggcatgattccaccgcttctgataaagaa
gatgaattccggaaagaggaagaaacaatcttgagaggtcaagagctggaaaacgcagtg
ttagacgccgaatacactaaagccataagattagcatttgagcttcgtaggcctcacaaa
gtttacgaactctttgctggcctctgcaagaaaagagaatcagacgaccagattgtgaaa
gctcttcaaggacttgaaaaagaagagttccgtttactttttgaatatctcagagaatgg
aacacaaaaccaaaccgatgccacattgctcagtttgttctttaccaaaccttcaacata
cttcctcccacagaaatcgttcaggtaaagggaattggagaactcctggaaggtctaatc
ccatattctcagagacatttcaataggatggacagatttgtaagaagcagtttcttgtta
gactacacactcggtgagatgtctgtgattgatccagagacagagactgagactgagtat
cgcaaggacaagaagatggaagaagtaaaggtcatcgcttctgtgtctgcaatggaacaa
gactcggaaggaatagaccagaagacaccttcgaggaaacgaaagtctcagaaatcaaaa
gataaatcgaacaagaagagactcgttgcggaagctcagggaaatgtaatcacagtttga
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