Brassica oleracea (wild cabbage): 106317855
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Entry
106317855 CDS
T04124
Name
(RefSeq) uncharacterized protein LOC106317855
KO
K08518
syntaxin-binding protein 5
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106317855
Membrane trafficking [BR:
boe04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
106317855
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
106317855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
ANAPC4_WD40
WD40_Prp19
Beta-prop_EML_2
WD40
Beta-prop_RIG_2nd
Synaptobrevin
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Lgl_C
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
106317855
NCBI-ProteinID:
XP_013611094
LinkDB
All DBs
Position
C9:complement(52797881..52804579)
Genome browser
AA seq
1084 aa
AA seq
DB search
MFAKKLLQKASGGAQKPAPAPSPRGCLIAEEDLDPHIVSHYGIPSTASLLAFDPIQCLLA
VGTLDGRIKVIGGDNIEAILSSPKQLPFKNLEFIENQGFLVSISNDNEIEVWDLDLRKTA
SSLLWESNITAFSILHGTGYMYVGDEYGMVSVVKYNADEGKLVQLPYYVPTDALAEAAGL
SSPIDYPVVGLISQPSSRGTRLLIAFSNGLLFLWDASEDRVVLVRGNKDLPMEGKTVNDS
LEASHDELSDLELDGKEISSLCWASADGSVLAVGYVDGDILFWDISEGQKGKASNHAVKL
QLSSAEKRLPVIVMHWCLDVTRKNCGGKLFIYGGDIIGSDEVLTMLALDWSSGLGGLKCV
GRVDLTLSGSFADMVLSPIASSRQSGVFLFLLTNPGQLQAYDDTSLASLMSQKENNSSAS
PLPYPMVVPTMDPRMTVAVFAALDVNDKLSLALSEIVVAAKSRTPRTPSGESAQWPLTGG
VPSHLDDYKLERLYIAGYQDGSVRIWDATYPCLSLIYDLKPNANGIDITGVDASVTSISF
CSKTSCLAVGSESGMVRLFKLIGHKSGGTLEVVTNTDKKAHHLHQEDGPQWLAAYSFLSS
PVCTLRFVQSTRRLAVGFKCGRVAMLDIGAPSVIFVTNSLSDTGSPIESLCVKSSPVPTD
QNSKSSEAFDDLILCAMTKDGQTILFDGNSGKMLASCLKPLKNPTAIRMHIIENCYENSE
MPSEKHEKKSHMINASESHSPAGEHNAVTETKFVDQIFENSLFLMCSEDALRLYSLKSLS
QGSLESIMELNIPRPCCWMGTLKKDGRECAVLLLYKTGHIEIRSFPNLEVVGESSLLSLL
SWNFKPNMEKTVCSDDFGHVLLVNGCEVAILSFLAHANGFRLPESLPMLHDKVLAAAADA
TFSHFPVHKKNNDGTPKFLSGIIKGFRSSNEQKVEQVQDFSHLGNIFSSPPYLKPSAIGG
DDEKIIELNIDDIEIDEPTNILPSTGKDKKEKKDKRTDKERLFDGASSDAQPKTRTVDEI
KAKYRKAGETSAIASQAKDKLLERGEKLERISQRTAELQDGAENFASMAHELAKQMEKRK
WWNI
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgttcgctaagaaacttctgcagaaagcctctggaggtgctcagaagcctgccccagct
ccttcgccacggggatgtttgatagcagaagaagacttggatcctcatattgtctcccac
tacgggataccttcgacggcgtctcttcttgcttttgaccctattcaatgcctcttggct
gtgggaacactagatggaaggatcaaagtgattggtggtgataacatcgaggcgattctt
tcatctcctaagcagttacctttcaaaaacttagagttcattgagaaccaaggctttctg
gtcagcatctcaaatgacaacgagattgaggtttgggacttggatcttagaaagacagca
tcaagcttactttgggagtcaaacattaccgcattttcaatccttcatggcaccggttac
atgtatgttggtgatgagtacggtatggtgtctgttgtaaagtacaatgctgatgaagga
aaattagtgcagcttccttattatgttccaactgatgctttagctgaagcagcagggctt
tcctcacctattgactatcctgttgttggacttatttctcagccttcttcaaggggaact
agattgttgattgcattttcaaatggattactttttctttgggatgcatcagaagatcgt
gtggttttagttcgagggaacaaagatctacctatggagggtaagacagtcaatgattct
ctggaagcctcacacgatgagctttctgatcttgaactagatgggaaagagataagttct
ctgtgttgggcatcagctgatggttcagttcttgctgttggttatgtggatggagatata
ttattttgggacatttctgagggacaaaagggaaaggcatctaatcatgctgttaagtta
cagttgtcttcagctgagaaaagacttcctgtcattgttatgcattggtgtttggatgtg
actcgcaagaattgtggtggaaagctctttatctatggtggtgatatcattggctctgat
gaagtactcacgatgttggctcttgattggtcttctggtttgggaggtctgaaatgtgtt
ggccgtgtggacttgacccttagtggttcatttgctgatatggtcttgtctccaattgct
agttcaaggcaaagtggggtgtttttattcctgctgacaaatccaggacaattgcaagcg
tatgatgatacctctctggcctctctgatgtctcaaaaagagaataatagttctgcttct
ccgctgccatatccgatggttgtaccgacgatggatccacggatgacagtagcagtgttt
gctgcattagatgtgaatgacaagctgtcactggctttatccgagatagtcgtagctgca
aaatctcgaactccacgtactccatctggagaaagtgcacaatggcctctaacaggtggt
gttccaagccatcttgatgactacaagcttgagagactgtacatagcaggatatcaagat
gggtctgtgcgaatatgggatgcaacctatccatgtctgtctctcatttacgacttgaag
ccaaatgcaaatggtattgacataactggagtagatgcatcagtaacatcaatttctttc
tgttctaagacttcttgtttggctgttggtagcgaaagtggtatggttcgcctattcaag
ctgatcggccataaaagtggaggcactttggaagttgttaccaacactgacaaaaaagct
caccatttacatcaagaagatggacctcaatggctggctgcgtactccttcctgagttcc
ccagtttgcaccctacgatttgtacagtctacaagaaggcttgctgtgggatttaaatgt
ggcagagttgcaatgctcgacattggtgcgccatcagtaattttcgttacaaatagctta
tctgacaccggttccccgatcgagtcactctgtgtgaaatcctcaccagttccaactgat
cagaactccaaaagttccgaagcttttgatgatttaattttgtgtgcaatgaccaaggat
gggcagaccattcttttcgatggcaatagtgggaaaatgctcgcctcatgcttgaaacct
ctgaagaatccaactgcgattcgtatgcacattatagagaactgctatgaaaactctgag
atgcccagcgaaaaacatgagaaaaaatctcatatgatcaatgcaagtgagagtcattca
ccagctggtgaacataacgctgtcacagaaacaaaatttgttgatcagatatttgagaat
tcattatttctcatgtgttctgaggatgcactgcgcttgtattctttgaagtctttatct
cagggaagtcttgagagcattatggagttaaatattccaaggccgtgttgctggatggga
accctgaaaaaggatggaagggaatgtgcagtactcctgctttacaaaacagggcatatt
gagataagatcgtttccgaatcttgaagttgtgggagagagctctttgctgtcacttctt
agttggaactttaagcctaacatggagaagacagtatgctcggatgatttcggccatgtc
ttactggtgaatggttgtgaagttgccatcctttcgtttttggcccatgcaaacggattc
agacttccagagtctttacctatgcttcatgacaaagtccttgcagccgctgcagacgct
acctttagccatttccctgtccacaagaaaaacaacgatggcactcccaaattcctaagt
ggcattatcaaaggcttcagatcaagcaatgaacagaaggtggagcaagtacaagatttc
tcccacctggggaacatcttttctagtccaccatacctaaagccttccgctattggtggc
gacgatgagaagattatcgagctaaacatagatgacatcgagatagatgaacctacaaac
atattgccttcaaccgggaaagacaaaaaagaaaagaaagacaagagaacagataaggaa
agactgttcgacggtgcatccagcgatgcacaacccaaaacaagaacagttgatgaaata
aaggccaagtacagaaaagcaggggaaacctcagcaatagcttcacaagcaaaggacaaa
cttcttgagcgtggagaaaaactcgagaggatcagccaacgcacagctgagctccaagac
ggtgctgagaactttgcatccatggcacatgaactcgctaaacaaatggagaagcgaaaa
tggtggaacatatga
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