Brassica oleracea (wild cabbage): 106317898
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Entry
106317898 CDS
T04124
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106317898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106317898
03019 Messenger RNA biogenesis [BR:
boe03019
]
106317898
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106317898
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106317898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
106317898
NCBI-ProteinID:
XP_013611158
UniProt:
A0A0D3E856
LinkDB
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Position
C9:complement(23501438..23505236)
Genome browser
AA seq
774 aa
AA seq
DB search
MQSEKIINPSLLLGTTTGRKSMSVVKPPPPPSILDRFKALLNQREDEFGGEDPSSEEVVQ
LYEVVLGELTFNSKPIITDLTIIADEQREHGEGIANAICTRILEAPVEQKLPSLYLLDSI
VKNIGRDYARYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSGVFPSPVLRKIEMQLKL
TSATNSQSSLGASEPTQPTRGIHVNPKYLRRLEPSAAESNLRGISSSAKVYSQNSVGGYD
DFEDQLDSPSSLAGPRSITAGTLTLASSAIGADGFPRRFSDGVNSSNQAYNYGMGRATGR
DDEHMDWRRKENFGQGNDHERPRALIDAYGVDTSKHTSISRPIRNVNGIHSKMVTPWQNT
EEEEFDWEDMSPTLERSRAGEFLRSSVPALGSVRPRPRLGNIHDFQLDSDIKNGMNSRFG
RGPAMISRVGPSGADALPDGTWPHLGVRGSNSLPVPSAHVHHLANPGNAMLNHLNGKPLY
RPENQVSHMTQQSQVLGNYLPSSSAMAPRAMQSLLPHGHGYPPLGSTIRPSLSVHGGEAM
HPHSSGVSISQNPSLGASNQPPGGAFSGLIGSLMAQGLISLNNQPTGQGASVMEFDADML
KIRNESAITALYGDLPRQCTTCGLRFKSQEEHSKHMDWHVTKNRMSKNHKQKPSRKWFVS
GSMWLSGAEALGAEAVPGFLPVEPTTEKKDDEEMAVPADEDQTSCALCGEAFEDFYSDET
EEWMYKGAVYMNAPDGSTTDVDKSLLGPIVHAKCRPESNGGDMEEGSQRKRMRS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggagaaaatcatcaacccaagccttcttctcggcaccaccaccggccgcaaa
tcgatgtccgtcgttaaaccgccgccgccgccttcgatactcgaccggttcaaggctctg
cttaatcagcgcgaggatgagttcggtggcgaggatccgagttcggaagaggttgttcag
ctctacgaggttgttctgggcgagctcactttcaattccaagcctatcatcaccgatctc
actatcatcgccgatgagcagcgggagcacggcgaaggaatcgctaatgctatctgcact
cgaatcctcgaggcaccagttgagcaaaagctgccatctttgtatcttttagacagtatt
gtcaagaacattgggagggactatgctcgttacttctcgtctcgtttaccagaggtcttt
tgtctagcgtacaggcaagcgcacccgagtttacatccttcaatgcgccacctgtttggg
acttggtctggtgttttcccatcacctgtattacgcaagattgagatgcagttgaagctt
acttccgcaacgaacagccaatcttccttaggggcttctgagccgactcaaccaacaagg
ggcatacatgttaacccgaaatatcttcgtaggctggaaccctctgccgctgagagtaac
ttgagaggaataagttccagtgcaaaagtgtatagtcaaaactcagtcggcgggtatgat
gattttgaagatcagttagatagcccatcttctctggccggacccaggtctattacagct
ggaactttgaccctcgcatcttctgcaattggagcagatgggtttcctaggaggtttagt
gatggagttaattcttctaatcaagcctataactatggaatgggtcgggctactggcaga
gatgatgaacacatggactggcgaagaaaggaaaactttggccaaggaaatgaccatgaa
agacccagagcgttgatagatgcatatggagttgacaccagcaaacacacatccatcagt
agaccaatccgcaacgtgaatggtatccacagtaagatggttacaccatggcagaacacc
gaggaagaagagtttgattgggaagatatgagccctacactagagcgtagtagggctggt
gaatttttgcgatcatctgttccagcattaggaagtgtaaggccaagacctagactagga
aacatacatgattttcagttagattctgacattaagaacggtatgaactctcgttttggt
cgaggacctgcgatgatatcaagagttgggccttctggtgctgatgctcttcctgatggg
acatggccccatttgggtgttagaggatccaactctctccctgtgccttctgctcacgtg
catcatttggcaaatcctggtaatgcgatgttaaatcacttgaatggtaagcctttatat
aggccagaaaaccaggtctcccacatgacccaacagagtcaagtgctaggaaattactta
ccgtcttcatctgcaatggcaccaagggcaatgcaatcgctgttaccccacggtcatggt
taccctccactagggtcaaccattagaccatctttatcagtccatggtggggaagccatg
catcctcattcttcaggggtttccatctctcagaatccttcgttgggagcctctaatcaa
ccaccgggcggtgcattctctggtctgattggctctctcatggctcaaggtttgatctcg
ttgaacaatcagcctactggccagggggcttcggtgatggagtttgatgcggacatgctc
aagatacgtaacgagtctgcaataactgctctatatggggatcttcccaggcaatgcaca
acatgtggtctacgcttcaagagccaagaagagcacagtaagcacatggattggcatgta
accaagaacagaatgtccaagaaccataagcagaagccttctcggaaatggtttgtaagt
ggtagcatgtggcttagtggcgcagaggcacttggagctgaagcagtgccggggttctta
cctgtcgagccaacaacagaaaagaaggatgacgaagagatggcagttcctgcagatgaa
gaccaaacttcatgcgcattatgtggtgaggcgtttgaagacttctatagtgatgagacg
gaggaatggatgtacaaaggtgctgtgtacatgaatgctcctgacggatcaacaacagat
gtggacaagtctttgttaggtcctattgtacatgctaagtgcaggccagagtctaatggg
ggtgatatggaagagggtagtcaaagaaaaaggatgcggagttag
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integrated database retrieval system
