Brassica oleracea (wild cabbage): 106317988
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Entry
106317988 CDS
T04124
Name
(RefSeq) protein CHROMATIN REMODELING 5
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106317988
03036 Chromosome and associated proteins [BR:
boe03036
]
106317988
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106317988
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
106317988
SLIK complex
106317988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
106317988
NCBI-ProteinID:
XP_013611270
UniProt:
A0A0D3E2U6
LinkDB
All DBs
Position
C9:complement(7005643..7016449)
Genome browser
AA seq
1689 aa
AA seq
DB search
MAFFRNYSNDTVSPSALDDNQDAATFQSSSPLHQDMDATYTERGFDMNMDIQYQCEAEPG
SSIGQQNQTGAAVPSGRRTGVSGKWGSTFWKDCQPMGQRDGADSAKHSLSGYKHSEDYLS
NGEKLDSENENEEDNAMNKQQSGQADIPAEEMLSDEYYEQDEDNQSDHVQYKAFGDPINS
RSLPKTGSSIHSKSRTSRAIQKNIHYGDADIDYEEEEDEDDPEDADFEPYDAASGGDASK
KHDQDWDVSDEDPDSDDDFDLPDSEDDYDTKKPKARQQGKGFRKLSSGLDRKSAQASSRQ
KRKPSYQEDFSEDDSDNDIDEGFRSMPRRGTTLGKNNGRSTNNIGQSSEVRSSTRSVRKV
SYVESEDSEEIDDGRNRKTQKDDIEEEDCDAIEKVLWHQPKGMSGDAHTNKKLTVPVLLS
QLFDTQPDWNEMEFLIKWKGQSHLHCQWKSLSDLQNLSGFKKVLNYTKKVTEEIRYRTAL
SREEIEVSDVSKEMDLDIIKQNCQVERIIADRICKDDLGDVVPEYLVKWQGLSYAEATWE
KDVDIAFAQAAIDEYKAREVSIAVQGKMVEQQRTKGKASLRKLEEQPEWLSGGTLRDYQL
QGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWA
KEFRKWLPDMNIIVYVGTRASREVCQQYEFYNEKNVGRPIKFNALLTTYEVVLKDKAVLS
KIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPAK
FKNKDEFVQNYKNLSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPL
QKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNTK
LDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTK
AELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAH
RIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRETKKGANFDK
NELSAILRFGAEELFKEDKNDEESKKRLLSMDIDEILERAEQVEEKDAGESEHELLGAFK
VANFCNAEDDGSFWSRWIKPESVVTADEALAPRAARNTKSYVDHDRSQPDRTSKRKKKGS
EPPDRSQKRRKTEYFVPSTPILEGTTAQVRGWSYGNLPKRDAQRFYRTVMKFGNHNQIAC
IAEEVGGVVEAAPEEAQVELFDALIDGCRESVETEDFESKGPVLDFFGVPVKANELLKRV
EGLQLLSKRISRYDDPITQFRVLSYLKPSNWSKGCGWNQIDDARLLLGILYHGFGNWEKI
RLDESLGLTKKIAPVELQHHETFLPRAPNLKERATALLEMELSAAGGKNTNAKASRKNSK
KVVINQLKAPARDRKGKSGAANLITTKDVGPRRTQKSEPLLVKEEGEMSDDEEVYEQFKE
QKWMEWCEDVLAGEIKTLERLQRLQTISADLPKEKVLFKIRRYLQILGRRIDEVVLEHEE
DSYKQDRMTMRLWNYVSTFSNLSGDRLNQIYSKLKQEREEEEGVGPSHLNGSTAGRRQQR
FKTPGPPQVHKGIDTAKFEAWKRRKRTENNDVHQSERPLISNNSNSLGILGPAPSDRSHR
ARQAGFPPR
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggctttctttaggaactactctaacgatactgtatcgcctagtgctctcgatgacaat
caggacgctgctactttccagagttcttcacctttacatcaagatatggatgctacttat
accgaaagaggctttgacatgaacatggacattcagtatcaatgcgaagcagagccggga
tctagtattgggcagcaaaaccagacgggggcagctgttccttcgggaaggaggacgggt
gtatctgggaagtggggttccaccttttggaaagactgtcagccaatgggacagagagac
ggcgctgattctgccaagcattcactttctggttacaaacattctgaagattatctatcg
aacggtgaaaaattagattctgaaaatgaaaatgaggaggataatgcaatgaacaagcag
cagagtggtcaagctgatattccagctgaggaaatgctctctgatgaatattacgaacaa
gatgaagataatcaaagtgaccatgtccagtacaaagcgtttggcgatcctataaattct
agatcactgcccaagacgggatcttctatccatagcaagtcaaggacctcgagagcaatt
caaaaaaatattcactacggtgatgctgatatagactatgaagaggaggaagatgaggat
gaccctgaagacgctgactttgagccctatgatgctgcttctggtggtgatgcaagcaag
aagcatgaccaagattgggacgtttctgatgaagatcctgacagtgatgatgatttcgat
ctccctgattccgaggatgactacgacacaaaaaagcctaaggctagacaacaaggtaaa
ggtttccggaagttgagctctggactcgataggaaatcagcccaggcttctagtcgtcaa
aagaggaaaccatcatatcaagaggacttctcagaggatgattctgacaatgacatagac
gagggttttagaagcatgcccagaagagggacaactctagggaaaaacaatggaaggtct
acaaataatataggacagagtagtgaagttcggagctccaccagatcagttcgaaaagtg
tcttatgtggagagcgaggacagtgaagaaatagatgatgggagaaatcgaaaaactcag
aaggatgacattgaagaggaggattgtgatgctattgaaaaagtgctttggcatcagcca
aagggcatgagtggagatgctcacacgaataaaaaattaacagttccggtgctactaagc
caactttttgatactcaaccagattggaatgaaatggaattcctaataaaatggaaaggt
caatctcatttgcattgtcagtggaagtcattgagcgatctccagaatcttagtggcttc
aagaaggtacttaactacacaaagaaagtgacagaggagattaggtacaggacagcactc
tcacgtgaggagattgaggtcagtgatgtgagcaaagaaatggatctggacatcattaag
cagaattgtcaggtagaaagaataattgcagatcgaatttgcaaagatgatttaggtgac
gtggtgccagagtatcttgtaaagtggcaagggctttcttatgctgaagctacttgggag
aaggatgtcgatatagcatttgcacaggctgctatcgatgagtacaaggctcgtgaagtt
tcaattgcagtgcaaggaaaaatggtggaacagcagcgtacaaaagggaaagcaagtctc
cggaagcttgaggagcagcctgagtggctaagcggaggtacgctacgggactatcagctg
cagggtttgaatttccttgtcaacagctggcttaatgacactaatgtcattttggctgac
gaaatgggtcttggtaagactgttcagtccgtttcaatgcttgggtttttgcagaatacc
caacaaataccaggtccttttcttgtcgttgtgcctttgtcaacattagctaattgggct
aaagaattcagaaagtggcttcctgacatgaatataatagtatatgttggcacccgggca
agtcgagaggtttgtcagcaatacgaattttacaatgaaaagaatgttggccggcccata
aaattcaatgctctgttgaccacctatgaggtggttcttaaggataaagctgttctctcc
aagattaagtggatttacttgatggtggatgaagcacatagactgaaaaatagtgaggca
cagctgtacacggcccttttggaatttagcacgaagaataaattgcttattactggtact
ccactacagaatagtgtcgaagagctatgggctctgctccacttccttgatcctgccaag
tttaagaataaggatgagtttgttcaaaactacaagaatcttagctcatttaatgaatcc
gagctcgccaatctccatttagaattgagacctcatattctacgaagagtgatcaaggat
gttgaaaagtctctgcctccaaaaattgagcgtatactaagagtggagatgtcccctctt
cagaaacagtactacaagtggatactggagcgcaacttccatgatttaaataaaggggtg
cgcggtaatcaggtttcacttttaaacatcgtggtggagttgaagaagtgctgcaatcat
cctttcttatttgaaagtgcagaccatggatatggtggtgacattaatgataacactaaa
ctggataagattatcctaagcagcggaaagctggttatcctagataagctgctggttaga
ctgcgtgagactaagcatcgcgtgcttattttttcgcagatggtaagaatgttagatatc
ctggcagaatacctctctcttagaggtttccagttccagagactggatggtagtaccaag
gcagaacttcgtcagcaagcaatggatcattttaatgctcctgctagtgacgacttctgc
tttcttctttcgacccgagctggtggtctgggaatcaatcttgctactgctgatacggtc
gttatatttgactctgactggaatccacagaacgatctgcaggcgatgagtcgagcgcac
agaattgggcaacaagaagttgtgaacatttatagatttgtcacgagtaaaagtgttgag
gaagagatcctagagcgcgccaaaagaaaaatggttcttgatcatttggttattcaaaaa
ctaaatgcggagggtaggttggagaagcgggaaactaaaaagggagctaacttcgacaag
aacgagctttctgcaatattaagatttggagcggaagaactttttaaagaggataaaaat
gatgaagaaagcaaaaagcggctgttaagtatggatattgacgaaatcctagagagggca
gagcaagtagaggaaaaggatgctggcgaatcagagcatgaactgttgggtgctttcaag
gttgctaacttttgtaacgctgaagatgatgggtccttttggagtcgttggataaaacct
gaatctgtggtcacagctgacgaagctcttgcaccacgggctgctaggaatacgaagagt
tatgtggatcatgataggagccaacctgacaggaccagtaaaagaaaaaagaaaggatct
gaacctccagatagaagtcaaaagcgcagaaaaactgaatattttgttccctcaactcca
atattagaggggactacagctcaagttagaggctggtcctatggaaatctccctaagaga
gatgcacaacgattttatcgaactgtcatgaagtttggtaaccataatcaaattgcatgt
attgcggaagaggtgggtggtgttgttgaagcagccccggaggaagcacaggttgagcta
tttgatgctttaattgacggttgtcgggaatctgttgaaacagaagactttgaatcaaag
ggtcctgtgttggatttctttggtgtgccagtaaaagcaaacgaactgttgaaacgtgtg
gaaggactccagctcttatcaaagcgtattagtcgatatgacgatccaattacacaattc
cgggtgttgtcctaccttaaaccttcaaattggtccaagggttgcggttggaatcagatt
gatgatgcgagattgcttctggggatactttatcatggttttgggaactgggagaagata
agattagatgagagccttggacttacaaagaagattgctccagttgaacttcaacaccat
gagacttttttacctcgtgctccaaacctaaaggagcgtgctactgctcttcttgaaatg
gaactttcagcggcaggagggaaaaacacaaatgccaaagcatcacgtaaaaattcaaaa
aaggttgtcatcaatcaattgaaagcacctgctagagaccgaaaagggaaatctggtgct
gccaatctaataacaacaaaagatgttggacctcggagaacccaaaaatctgagccgcta
ctggtgaaggaagagggagaaatgtctgatgatgaggaagtttacgagcagtttaaggag
cagaaatggatggaatggtgtgaggatgtattggctggtgaaatcaaaacacttgaacgt
ctacaaagattgcaaacaattagtgcggatctgccaaaggagaaggtgcttttcaaaatc
cggagatatttgcaaatccttgggaggagaatagatgaagttgttttagaacacgaagag
gattcgtacaagcaagatagaatgacaatgagattgtggaactatgtttcaactttctca
aacctatcgggggatcgactcaatcagatctactccaaattgaagcaggagagagaggaa
gaagaaggggttggaccatcgcatctaaatggctcaacagccggtaggaggcaacaaaga
ttcaaaacaccaggacctccgcaagttcacaagggcattgacacagcaaaatttgaagca
tggaaaaggagaaaaagaacagagaataatgatgttcatcaatctgagcgaccactgata
agcaacaactctaactcactgggaatactgggccctgcaccatctgatagaagccatcgg
gcacgccaagctggatttccgccaagataa
DBGET
integrated database retrieval system
