Brassica oleracea (wild cabbage): 106317989
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Entry
106317989 CDS
T04124
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106317989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106317989
Membrane trafficking [BR:
boe04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106317989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
VPS8_N
Beta-prop_RIG_2nd
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_EML_2
TPR_VPS8_2
zf-RING_Vps41
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
zf-RING_2
zf_RING_Vps8
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
106317989
NCBI-ProteinID:
XP_013611272
UniProt:
A0A0D3DZU0
LinkDB
All DBs
Position
C9:539854..548260
Genome browser
AA seq
1893 aa
AA seq
DB search
MNKSHVELDLDSFLVSDSDSEPDSDPSSVPHRTVDEILNDSSSSSPSSSPPPSPPPLLNR
RNQNARPQSEIHRLTDPTRRNPAPSTSLRQLPLPSLFAGVRSNVKPGAALAAAVAASRLV
PTPHAAIIKSRRAISASSELLLGAGEEEDHEVLSSNGDSAGIAADSVSVEDKDDGATSLA
SQDNEVQASDIADYEKNSKPDLVTASSGVDVEEDVSTEQEGMTTTEALVADAAVDGVKDE
TMFVAPSAESSESLHLNDSDDVKVSNDEESSGGDVKNDDSDVTILDSKEEEEGGDDALVP
DDGSSVSGISELVEERIEEMEKERMSKREKLKSRSFRKQLVLAEEFEKKQAYTGLHWEEG
AAAQPMRLEGVKIGSTNLGYFDVDTSNIVSRTVSSQAFKRDHGSPQVLAVHLNFIAVGTS
KGVIVVVPSKYSSDTADQMESKMIWLGLQGERSHSPVTSVCFNQQGGLLLAGYGDGHVTV
WDVQRASAAKVITEHTAPVVYAFFLGRDSQGSRIFKIITSDTKGVVFKHTFSWTLLLNMY
TVKTQCLLDGQKNGMVLSASPLPDEIFGSSLASSKAGNTATPSSSISSMVGGVVGVDSSW
KLFNEDSSAVEEGVVVFVTYQTVLVVKLIPNLEVYAQLPRPEGVREGSMPYTAWKCSIEN
SSKEAEDRVSFLAIAWDRRVQVAKLVKSKLKECAKWSLDSVAIGVVWLDDQLLVIPTVTG
HLYLFTRDGVVIHQTSFSVDGSSGNDLISYHTYFTNVFGNPEKAYHNSVGVRGASVYILG
TARLVISRLLPWKERVDVLRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVDAIREAIAPS
LAELLLSYVDEVFSYITIAFSSQIEKNGVTNEPNSGTNNVNLEIEEQYNRVGGVAVEFCA
HINRMDLLFDEIFSRFVAVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSRKGWLQ
RIEQCVLHMDISSLDFNQVVRICREHGLYGALLYLFNKGLDDFRSPLEELLIVFRNSERQ
RSTAIGYRMLVYLKYCFLGLAFPPGHGTLVPTRLPSLRAELIQFLLEKSNSHESSRCVSS
PRIYLNLYHLLELDTEATLDVLRYAFAESEMVDHETLLLESGEVSLEPKTDGSIPEDRCN
DMLIQNVIEALVHIIDGGFSQLDESGDPDDSKSDNKWPSKEDTSHLFEFVAYYAARGRAS
IPKSVLAQILDYLTSDHILPTYNMSPKMRENQFLNLLQAVPETDWDVAYVSQLCEKAHFY
QVCGYIHTIGRRYVAALESYMKEAEEPIHSFCSVNKMLSQLNGNEFTAFQSAVIDRIPEL
LELSREGTFFLIIDNLKDNITRIQEQLHSHPRSMFLYLKTVIEVHLSGSLDFSRLRKHEA
VDSLGENTRRNIPKEAELYLEGLNNFPKFIQDNPVNVTDDMIELYLELLCKYEPKSVLRF
LETFDNYRVEHCLRLCQKYGIADAAAFLLERVGDAASALSLTLSGLGEKLVALENAVTCL
ISELKLIANEVATLEQSTSALELKEVNDIQGVLQACIGLCQRNTPRLNPEESEILWFRFL
DTFSEPLMDSYREPRTVDEVNKGTSSVKSLELCVDEIVDTIKWRIPRSNVAGTQILRKLM
SQFIKEIVEGMIGYVRLPTIMSKLLSDNGTQEFGDFKLTILGMLGTYGFERRILDTAKSL
IEEDTFYTMSLLKKGASHGYAPRSLLCCICNCPLTKTFSTLRVRVFNCGHATHLQCEVSE
SETSSSSSSSGCPVCMTKKTTQSSSKGKSFYLDYGLISTVSSSTGTSQRASPYSYENEMI
DHSHSQQISRFEMLTKLQKDQRLVQIESLPRLKLSPPAVYHEKVSRVSGFTPGESSGKDT
KPSQSGLMSKKMKAKGSIFRPRLAFGKDKTSRR
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagtcgcacgtggaactcgatctcgattcgtttctagtatccgactccgactcc
gaacccgattcggatccttcctccgttcctcaccgcacagtcgacgagattctcaacgac
tccagctcctcgtctccctcttcttctccaccaccatctccgccgccgttgctcaaccgc
cggaatcaaaacgcgagacctcaatccgaaatccatcgcttaaccgatccgacgcggcgg
aatccggcaccgagtacttcgttgaggcagttgccgttgccgtcgctgttcgcgggagtg
aggtccaatgtgaagccgggagcggcgcttgcggcggctgtggcggcttccagattggtg
cctacgccgcacgctgctataatcaagtcgaggagagctattagtgccagtagcgagttg
cttttgggcgctggagaagaagaagatcatgaggtcttatcatcaaatggagattctgct
ggaattgctgcagattccgtttctgtggaggataaggatgatggagctacttcacttgca
agtcaagataacgaagttcaagctagtgatattgctgattatgagaaaaactcaaagcct
gacttagtcactgcctcctctggtgttgatgttgaagaagacgtctctacagaacaagag
gggatgaccacaacggaagctctagttgctgatgctgctgttgatggagtgaaagatgag
acaatgtttgtcgctccttctgcggagtcttcagagtctttacatttgaatgattctgat
gatgttaaggtaagtaatgatgaggagtcaagtggtggagatgttaagaatgatgattca
gatgtaactatactagattctaaagaagaggaggagggaggtgatgatgctctggttcct
gatgatgggagctcagtgtccggcatttcggagcttgtagaagagaggattgaggagatg
gaaaaagaaaggatgagcaaaagggagaagctaaagtcgcgatcttttaggaagcagctt
gtcttggctgaagagtttgagaagaaacaagcatatactggtttgcattgggaggaagga
gctgctgctcagccaatgagacttgagggtgttaagattgggtcgacgaatctaggttac
tttgatgttgatactagcaatatcgtcagccgaaccgtttcgtcgcaggcatttaagcga
gaccatggttctccgcaggttttggctgttcatttgaattttatcgcggtgggtacgtcc
aagggggtcatcgtcgttgtacctagtaaatattcttctgatactgcagatcagatggaa
tcaaagatgatttggcttggtttacaaggagaaagatcgcattctccggttacctcagtt
tgcttcaatcagcaagggggactcctgctagctgggtatggtgatggacatgttacagtt
tgggacgtgcagagagcgtcggcagcaaaagtgatcaccgaacacactgcaccagtagta
tatgcgttttttctaggccgggattctcaaggctctcgcatattcaaaataattacaagt
gacactaagggtgttgttttcaaacatactttctcttggactctgctgttgaatatgtat
acagtaaaaacgcagtgtcttctcgatggacaaaaaaatggaatggtcctatcggcatca
cctctgcctgatgaaatttttggaagctccttggcctcttctaaggcgggtaacactgca
acgccatccagcagtataagcagcatggtcggaggtgttgttggggtggattcaagttgg
aagctctttaatgaggattcgtctgcggtggaagaaggggttgtcgtatttgtaacctat
caaactgtattggtggtaaagctcattccaaacttggaggtgtatgcgcaacttcctagg
cctgaaggggttcgggagggttccatgccatacactgcctggaaatgttcaattgaaaac
tcttctaaggaggctgaagatagggtttcgtttcttgccattgcctgggatcgtagagtt
caggttgccaagttggtaaaatcaaaattaaaggaatgtgccaaatggtcgcttgacagt
gttgccattggtgtggtttggctggatgatcagttgctggtgatcccaactgtgacgggc
catttatatctgttcacaagagatggtgtggtaattcaccagacaagcttttctgtggat
ggttcttcggggaatgacctgatttcttatcatacgtactttacaaacgtctttggaaat
cctgagaaagcttatcacaactctgtgggtgtcagaggggcttcagtatacattctcggg
actgcacgtcttgttatctccagacttttgccatggaaggagcgggttgatgttttaagg
agaggaggtgactggatgggtgcttttaacatggcaatgtcactttttaatgggcaagct
catggggttgttgacctccccaaaactgttgacgccataagggaagcaatagcacccagt
ttagcagagttgctactttcctatgtagatgaagtattttcttatatcacaatagcattt
tccagtcagattgaaaagaatggagtaactaatgagccaaacagtggaaccaataatgtc
aatttagagatagaagaacaatacaatcgtgttggtggtgttgccgttgaattctgtgct
catattaacaggatggatttgctcttcgatgagatattttctagatttgtggctgtacaa
caaagagatacatttttggagcttttggagccttatattctaaaggatatgcttggatcg
cttcctccagagattatgcaagctctggtagaacattatagtaggaaaggatggctacaa
agaattgagcagtgtgttcttcacatggatatttcttccttagatttcaatcaggttgtc
agaatttgccgtgagcatgggctttatggggccttactctatcttttcaacaaagggttg
gatgatttcaggtcacctctggaggagcttttgattgtcttccggaacagtgagagacaa
aggtctacagccattgggtaccgaatgcttgtttatctaaagtactgctttcttggtttg
gcttttccaccagggcatggaaccctggttcctacgcgcttaccatcccttagggctgag
ttgattcagtttctactggagaaatcaaactcccacgaatctagtcgatgtgtatcatct
ccacggatttacttgaacctctaccatctgctagagctggatactgaagccactttagat
gtcctaagatatgcatttgcagaaagtgaaatggtagatcatgagacccttttgctggag
tctggtgaagtaagtttagagcccaagaccgatggcagtatcccggaagatagatgtaac
gatatgttgatccagaatgtgatagaggccctagttcatattattgatgggggatttagt
caacttgatgaatctggggatccagatgattcaaaatcagataataagtggccctctaag
gaagatacgagtcatctatttgagtttgttgcatattacgcagcacgtggaagagctagt
attcccaagagcgtattggcacagattttagactacttaacatcagatcacattcttccg
acttataacatgtctcctaaaatgagagagaaccaatttctaaaccttctgcaagccgta
ccggagactgattgggatgtagcttatgtatctcagctttgtgagaaggcacatttttat
caggtctgtggctatattcatactattggtcgacggtacgttgctgctttagaaagctac
atgaaagaggcagaggaacccatacattcgttttgctctgtgaacaagatgctttcgcag
ttgaatgggaatgaattcactgcttttcaatctgcagtaattgataggattcctgagctc
cttgaattgagcagagagggaacattcttcctgatcattgataatctgaaagacaacatc
acacgcattcaagagcagctccattctcatccaagaagcatgttcctttatctcaagact
gtcattgaggttcacttgtccgggagtcttgatttttctcgtctaagaaaacatgaagcg
gtggacagtttgggtgaaaacactagaaggaatatacccaaagaggctgagctttatttg
gaaggacttaataactttcccaaattcattcaagataatccagtcaatgtgactgatgac
atgattgagctttacttggagctattatgcaagtatgaaccgaagtcagtgttgagattc
ctcgaaacatttgataactacagggtagaacactgtctacgcctctgccagaaatatgga
attgcagatgcagcagcatttcttttggagagggtcggtgatgcagcaagtgctttgtca
ctcacactctctggactcggtgaaaaactcgtcgcgcttgaaaacgcagtgacttgcctt
atctcagaactaaagctgattgctaacgaagtagccaccttggagcaatccactagtgct
ctagagttaaaggaagtaaatgacatacaaggtgttctgcaagcctgtataggattgtgc
caacgcaacactcctcgccttaatcctgaagagtctgagattctttggtttcgctttctt
gacactttctcagagcctttgatggattcatatcgggaaccaaggactgtcgatgaagta
aacaaaggcacttccagtgttaaatcattggaactgtgtgtagatgaaatagttgacaca
atcaagtggaggattccacgatctaatgtcgccggtacacagatcctgaggaagctcatg
tctcagtttatcaaagagattgttgaaggaatgataggatatgttcgtcttccaacaatc
atgtcaaaacttctttctgacaacggtactcaagagtttggtgatttcaagcttacaata
ctgggaatgcttggaacatatggcttcgagcggagaatactggatactgcaaagtcttta
atagaagaggatacattttacaccatgagtttactcaagaaaggtgcttctcacggttac
gcacccagaagtttgctttgttgtatatgcaattgtcctctcaccaagaccttctctact
ctccgtgtccgtgttttcaactgtggccacgcaacgcatctgcaatgtgaagtgtcggag
agtgaaacatcatcatcatcatcttcatcaggttgtcctgtttgtatgaccaagaagacc
acacagagttcatccaaaggtaaatcattctacttagactatggactgataagcacagtt
tcttcaagcaccggcacttcacaacgcgcttcgccttactcttatgagaatgaaatgatc
gatcattctcatagccagcaaatatcacgatttgaaatgctaaccaagctacagaaagat
cagagactggtacagatagagagcttgcctcgactaaagctttcgcctcctgctgtgtac
cacgagaaagtgagcagagtctcgggttttacaccgggagagagcagtggtaaagacacg
aaaccatcccaaagtggactgatgagtaagaaaatgaaagcgaaaggatctatctttcgg
ccaagacttgcttttggaaaggacaagacgagcagaagataa
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integrated database retrieval system
