KEGG   Brassica oleracea (wild cabbage): 106318075
Entry
106318075         CDS       T04124                                 
Name
(RefSeq) lysine-specific demethylase 5D isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
boe  Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:boe00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:boe01009]
    106318075
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:boe03036]
    106318075
Enzymes [BR:boe01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     106318075
Protein phosphatases and associated proteins [BR:boe01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     106318075
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    106318075
SSDB
Motif
Pfam: JmjC PLU-1 JmjN zf-C5HC2 ARID PHD KDM5_C-hel WASH-4_N HFX_2341_N
Other DBs
NCBI-GeneID: 106318075
NCBI-ProteinID: XP_013611377
LinkDB
Position
C9
AA seq 1472 aa
MCLVMGKGRAKAVEKRVLDQKLRGSLNVPSGPVYYPTEDEFKDPLDYIHKIKPEAEAYGI
CKIVPPSSWKPPFGLDLESVKFPTKTQEIHRLQFRPASCNSKTFQLEYSRFVEEHLGKKL
KKRVVFEGDDLDLCKLFNAVKRFGGYDKVVKGKKWGEVYQFMSSGEKISKCAKHVLCQLY
KEHLHDFEKYHILMNADPAKGCKRNRRCSEFSSSKRRKIKAEVKNPKVQNEGEADQACEQ
CKSDTHGEVMLLCDSCNKGWHIYCLSPPLNHIPPGNWYCLDCLNTDEDTFGFVPGKCLLL
EDFKRIADRAKRKWFGAGPVSRTQIEKKFWEIVEGSGGEVEVMYGNDLDTSVYGSGFPRI
GDKRPESVEANVWEEYCRSPWNLNNMPKLKGSMLQAIRHNINGVTVPWLYLGMLFSSFCW
HFEDHCFYSVNYHHWGEAKCWYGVPGSAASAFEKVMRKTLPDLFDAQPDLLFQLVTMLSP
TVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGGSGAELY
RLYRKPAVISHEELLCVVAKANCCDGKGSIHLKKELLRIYSKEKTWREQLWKSGILRSSP
MFLPECPDSVGIEEDTTCIICQQFLHLSAIVCNCRPSVFACLEHWKHLCECEPTKLRLVY
RYTLAELHGMVQEVEKSGDCKTQETKSSQRPSSGTKRSAASNKKQEGMQVCQARPAEDWL
RRASTVLLDVFSSVEYATLLKEAEQFLWGGSEMDRVRDVAKSLIKAKIWAEAVDDCLSKV
EGKANNDPEKVHLEFIDELLRVDPVPCFQSGHLKLKDYAEEARKLSEKIDCSLSSSPTIT
QLELLHSEVTSSPISLRKHKILSKKISSAKMLAKRARCYLAASKAPGIELDELFKLKSEI
LELQVTLTETEGILDLLKKSELARDKCSKVLSGSISLKNVEELLHEFDGFISINIPELNI
LRQYHVEALSWISRFNDTMVDVREGKDQEKLISDLSSLLHDGASLGIQVSEIVEGLPLVE
VELKKASCREKARTVYAARTSLDFIEQLLSEAVALHIEEEKLFAEISRTLSTARCWEERA
SSILASETQMYVLKELVRMSVNIDAVLPSLKGIENTISLAETWLQNSEPFLSAASSMSSS
PCSLLELPSLKDLVAQSKSLSVQLQEPRILETLLRNCERWQCDNHQLLQDTEDLLATAKT
DDGKHSTILPEIMDLITRVASARTSGLSLGLNLEELPKLQTASLKLGWCYETILLGSSSP
SPELQEDLGKPSLQKIQQHLEEGQTLKILPEEYHLGKRLVELKDTGQEWAKRARKVVTDS
GALALEGVFELISEGENLPVIAEEELQSLRARSMLHCVCLKPYNSRSMVCCGQCGEWYHT
YCVKLHWRPEAYVCSACCPVAESSPQIDPLRSMEPKTPSLNHRRARRAVATDAAVGDLQW
KSRKRIQRVAKRSPQVFSGHSFFVMFPLEWRT
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgtgtttggtaatgggaaaaggtagagctaaggcagtagagaaaagggttttagatcag
aaactcagaggatctctcaatgtcccgtctggacctgtttattacccgaccgaagatgaa
ttcaaagacccgttagattatatacacaagatcaagcctgaggcagaggcttatgggatc
tgcaagatcgttccacctagtagctggaaaccgcctttcggtttggatttggagtctgtc
aagtttccgacaaagacgcaagagattcaccggttgcagttccgtcctgcttcttgcaac
tctaagacgtttcagctggagtacagtaggtttgtggaggagcatttaggtaagaagctg
aagaagagagttgtctttgaaggggatgatttggatctctgtaagctgtttaacgcggtg
aagaggtttgggggttatgataaggttgtcaaggggaaaaaatggggtgaggtttatcag
tttatgagctctggtgaaaagatctccaagtgcgctaagcatgttctgtgtcagttgtat
aaagagcatttgcatgattttgagaaatatcacattctgatgaatgcagatccggcaaag
ggttgcaaaaggaatcgacggtgttctgagttctccagctcaaagagaaggaaaataaaa
gctgaagtaaagaatccaaaggtgcaaaacgagggagaagctgatcaagcgtgtgagcag
tgcaaaagtgacacacatggtgaagtgatgctcttgtgcgatagttgtaacaaaggttgg
catatatactgtctctcgccgccgttgaaccatatcccacccgggaactggtattgcctt
gattgcttgaacactgatgaagacacttttggctttgtgcccggtaaatgcttgctactt
gaagactttaagcgcattgctgatcgcgccaaaaggaagtggtttggtgcagggccggtg
tctaggacgcagatcgagaagaagttttgggaaatagtagaagggtcaggtggtgaggtt
gaagttatgtatggtaatgacttggatacttctgtttatgggagtggttttcctagaata
ggcgacaaaagaccagaatcagttgaggcaaatgtttgggaggaatattgccgcagccct
tggaatctcaataacatgcctaagttgaaaggatctatgcttcaggccattcggcataac
atcaatggtgttacagtgccttggctgtatcttggaatgctcttctcttctttttgttgg
cattttgaagaccattgtttttactctgtgaattatcatcactggggagaagcaaaatgt
tggtatggtgttccaggcagtgcggctagtgcttttgaaaaggtcatgcgaaaaacccta
cctgatctctttgatgctcagccagatttgctctttcaactggttactatgttgagtccg
actgtcttacaagaaaacaaagtcccagtctacacagtattacaggagcctggaaacttt
gtgatcacgtttccaaaatccttccatgctggattcaatttcggtttaaactgtgcagag
gccgtcaactttgccactgccgattggctaccttatggtggttctggggcggagctgtat
cgactgtaccgtaaacctgcagtcatatctcatgaagagcttctctgtgtggtagctaag
gcaaactgctgcgatggcaaagggtcaatacatttgaagaaagaattgctcagaatatat
agcaaggaaaaaacttggagagagcagctctggaaaagtggtattttgagatcttctcct
atgtttctgcctgaatgccctgattctgtgggcatcgaagaggatacaacatgtatcatc
tgccagcagtttctccatctttctgctatcgtctgcaactgcaggccatccgtttttgca
tgcttggagcactggaagcacctttgtgaatgtgaacctacaaaactgcgcctggtatat
cgttatacccttgccgagttgcatggaatggttcaagaagttgaaaagtctggtgactgc
aaaactcaagaaaccaaaagttcacaacggccaagttcaggcaccaaacgatcagctgct
tctaacaaaaagcaggaggggatgcaagtttgccaggcacgaccagctgaagattggctt
cgtcgagcatcaacggttctcctcgatgtcttttccagtgttgaatatgccactcttttg
aaggaagcagaacagtttctttggggtggatcagaaatggaccgcgtacgggatgttgca
aaaagtttgatcaaagcaaagatatgggctgaagctgttgacgactgtctttcaaaagtc
gaaggcaaagccaacaatgatccagagaaagttcacttggagttcatcgatgagttgctg
agagttgaccccgttccttgctttcagtctggtcatcttaaattaaaggactatgctgaa
gaggctaggaagttgtctgagaaaatcgattgttctctgtcaagtagcccaacgatcacc
cagctggagctattgcactccgaagtcaccagttcaccaatatccctaagaaaacacaag
atcttgtcaaagaaaatatcttccgcaaagatgttagctaaaagggcgagatgctatctc
gccgcttcaaaggctcctggaattgaattggatgaacttttcaagctaaagtcagagata
ttggagcttcaggtgacacttacagaaacggaagggatcctggatttgctaaagaaatca
gaattagcccgtgataaatgtagcaaagttttgagtggttctatatctctcaagaatgtg
gaagagttgcttcatgaatttgatgggtttattagcattaacattcctgagctgaatatc
ctgaggcagtaccatgttgaggctttgtcttggatttcacgctttaatgatacaatggtt
gatgttcgtgaaggtaaagaccaagaaaagctgatcagtgacctgagttctcttctccac
gatggagcatccttaggcattcaagtttctgaaatagttgaagggctccctcttgttgag
gttgaactgaagaaggcatcttgtcgggaaaaagcgcgaacggtttatgctgcaagaacg
tctctggatttcattgagcagctgctctcggaagctgttgcactacatatcgaggaggag
aagttatttgctgagatctccagaactttgtcaacggcgaggtgttgggaggaaagagca
agcagtatccttgctagtgaaactcagatgtacgtccttaaagagctcgttaggatgtct
gtcaacatcgatgctgttttgccctctctgaagggcatagagaacacaatttctttggct
gaaacttggcttcagaactctgagccttttctatctgccgcttcctctatgtcgtcatct
ccgtgttctctgcttgaacttccttcattaaaggacctggttgctcagtctaaatcgctt
agtgttcaacttcaagaaccaaggattcttgaaacattgctgcgtaattgtgagaggtgg
cagtgtgataatcatcagctcttgcaagacactgaagatttgctggccactgcgaaaaca
gatgatggcaagcatagcacgattcttccggagattatggatttaataaccagagtggcc
tccgctagaacatctggtctgtcccttggtcttaatttggaagaacttcccaaacttcaa
acggcaagtttaaaactaggatggtgttatgagaccatcttgttaggctctagttcacct
tcccctgagctacaagaagatctaggaaagccctcgttacagaaaattcagcagcactta
gaagagggacaaacactgaaaatattacctgaagagtatcacttagggaagagacttgtg
gagctaaaagacactggacaagagtgggcaaaacgagctagaaaagtggtgacagactct
ggtgctcttgccttggaaggagtattcgagcttatctcggagggtgaaaatttgcctgtc
attgcagaggaagaacttcagtcattacgagctcgaagtatgctacactgtgtttgccta
aagccatacaactcaagatccatggtttgttgtggtcaatgtggcgaatggtatcacacc
tattgtgttaaacttcattggcggcctgaggcctatgtctgctccgcttgctgtccagtg
gcagaatcctctccacagattgatccccttagatcaatggagccaaagacaccgtcactg
aaccatagacgggcaaggagggcagtagcgactgatgcagcggttggtgatttgcagtgg
aaaagccgaaaacgcatccaaagggtagctaaacggagtcctcaggttttctctggtcat
tctttttttgtaatgtttccattggaatggagaacataa

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