Brassica oleracea (wild cabbage): 106318090
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Entry
106318090 CDS
T04124
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
boe04141
Protein processing in endoplasmic reticulum
boe04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106318090
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106318090
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106318090
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
boe01009
]
106318090
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106318090
03009 Ribosome biogenesis [BR:
boe03009
]
106318090
03110 Chaperones and folding catalysts [BR:
boe03110
]
106318090
04131 Membrane trafficking [BR:
boe04131
]
106318090
03051 Proteasome [BR:
boe03051
]
106318090
03029 Mitochondrial biogenesis [BR:
boe03029
]
106318090
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
boe04147
]
106318090
Protein phosphatases and associated proteins [BR:
boe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
106318090
Spliceosome [BR:
boe03041
]
Complex B
Other components
Prp19 complex
106318090
Complex C
Prp19-CDC5 complex
106318090
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
106318090
Chaperones and folding catalysts [BR:
boe03110
]
Heat shock proteins
HSP70 / DNAK
106318090
Membrane trafficking [BR:
boe04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
106318090
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
106318090
Proteasome [BR:
boe03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
106318090
Mitochondrial biogenesis [BR:
boe03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
106318090
Exosome [BR:
boe04147
]
Exosomal proteins
Proteins found in most exosomes
106318090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
DACNG
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
106318090
NCBI-ProteinID:
XP_013611399
UniProt:
A0A0D3AE77
LinkDB
All DBs
Position
C1:39785229..39787930
Genome browser
AA seq
648 aa
AA seq
DB search
MASKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPTNTVFDAKRLIGRRFSDPSVQADMRHWPFKVISGPAEKPMIVVNYKGEEKQFSA
EEISSMVLTKMREIAEAFLGTSVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSNVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVDAKNALENYAYNMRNTIKDEKIASKLDAADKKKIEDAIDQAIEWLEGNQLAEADEFED
KMKELESLCNPIIARMYQGGDMGGAGGMDDDAPAGGSGGAGPKIEEVD
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtaaaggcgaaggtccagcgatcggaatcgatctcggcactacctactcctgc
gtcggcgtgtggcagcacgaccgcgtcgaaatcatcgccaacgatcaaggcaaccgcacc
actccttcctacgtcgccttcaccgacagcgagcgtctcatcggagacgccgccaagaac
caagtcgctatgaaccctaccaacaccgtcttcgatgctaagcgtcttatcggaagaagg
ttcagcgacccctccgtccaggcggacatgaggcactggcctttcaaggtcatctccggc
ccagctgagaagcccatgatcgtcgtcaactacaagggagaggagaaacagttctcagct
gaggagatatcctccatggtcctcacaaagatgcgtgagatcgcagaagccttcctcggc
acgtccgtcaaaaacgccgtcgttacagtccccgcttacttcaacgactctcagcgtcaa
gccacaaaggacgccggagtcatctcgggactcaacgtgatgcgcatcatcaacgagcca
accgctgcggccatcgcctacggtctcgacaagaaggcgtctagcgttggggagaagaac
gtgctgatatttgacttgggaggtgggacgttcgatgtgtcgttgctcacgatcgaggaa
gggatcttcgaagtgaaggcgacggctggtgatactcatctcggtggtgaggattttgat
aacaggatggtgaaccacttcgttcaggagtttaagaggaagcacaagaaggatatcacc
gggaacccgagggcgttgaggaggctgaggacggcgtgcgagagagccaagaggactctc
tcttcgacagcgcagacgacgattgagattgattctctctacgagggggttgatttctac
acgactatcacgcgcgcgaggtttgaggagctgaacatggatctgttcaggaagtgtatg
gagccggtggagaagtgtttgagggacgcgaagatggataagagcaatgttcatgacgtt
gtgctcgttggtgggtccactaggatccctaaggttcagcagctgttgcaggattttttt
aacgggaaggagctttgtaagagtattaaccctgacgaggctgttgcttacggagcggct
gttcaggccgcgattttgagcggggaggggaatgagaaggttcaggacttgttgcttctt
gatgttacgcctctgtcattggggttggagactgctggaggtgtgatgactgttttgatt
ccgaggaacacgacgattccgacgaagaaggagcagatcttctcgacttattcggacaac
cagcctggtgtgttgattcaagtctacgaaggagagagagcgaggacgaaggacaacaac
cttttggggaagtttgagctcagcggcatcccgcctgcaccacgaggcgttcctcagatc
actgtctgttttgacatagacgccaacggtatcctgaacgtgtcggctgaagacaagacg
actggtcagaagaataaaatcacgatcaccaacgacaagggaaggctgtccaaggaagag
attgagaagatggtacaagaagcggagaagtacaaggcagaggatgaggaacacaagaag
aaggtggatgcgaagaatgctctggagaactacgcgtacaacatgagaaacacgatcaag
gatgagaagatcgcgtctaagcttgatgcagctgacaagaagaagatcgaggatgcgatc
gatcaggctattgaatggttggagggtaatcagctggcggaagcggatgagtttgaggat
aagatgaaggagctcgagtctctctgcaacccaatcattgcgagaatgtaccaaggcggt
gatatgggtggagctggtggcatggacgacgatgctcctgccggtggtagcggtggtgct
ggacccaagattgaagaagttgattaa
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