Brassica oleracea (wild cabbage): 106318226
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Entry
106318226 CDS
T04124
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106318226
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106318226
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106318226
NCBI-ProteinID:
XP_013611568
UniProt:
A0A0D3EGR8
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Position
C9:51396275..51398409
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AA seq
378 aa
AA seq
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MVRFLTIAFIPFLTILFVANVLDATELNVMDKCWRPNPHWRKVRNQLARCSVGFAGKMTG
NIGKGVTQYKVTDPSDDPLNPKPGTLRYAATLIKGKKWITFKRNMKINLHKPLLISSFTT
LDGRGVSVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIMELGQVDGDAI
RLVTAKKVWIDHNTLYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDKDM
RVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYFVAPES
GRKEITWKKHSQGDKMQWNFYSVNDYMENGACFGLRKGIGKARPNYGRSQRFTVADAKTV
KKLTSSAGALHCTRNSVC
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggttagattcttgaccatcgcgttcattcccttcttgaccattttgtttgtggcaaat
gtcttggatgccacggaactgaatgtaatggacaaatgttggagaccaaacccgcactgg
cgtaaagtccgtaatcagctggcacggtgttctgtcggattcgccggtaaaatgactgga
aacatcggtaaaggagtaacacagtacaaagtcaccgacccttctgatgatcctctaaac
cccaaaccaggaaccctaagatacgcggcaactctcatcaaaggcaaaaaatggatcacg
ttcaaaagaaacatgaagatcaacctccacaaaccgctactaatcagcagcttcaccaca
ctcgatggtcgcggtgtcagcgttcacatctccggtcccgcatgtctcatagtctacaaa
gccaccgatgtgatcattcatggactcaaaatccatgactgcaaagctcacccaccgagc
tcggtgatgggaccagactcaaagatcatggaacttggacaagtggacggggatgcgatt
aggctagtcacggctaagaaagtgtggatcgaccacaacacgttatatgactgcgaggac
gggctattagacgtcacgagagggagtactgacgtcacagtgtcgaacaattggtttagg
aaccaggacaaggtcatgcttcttggacatgatgatggctatgtgagagacaaagatatg
agagtcactgttgtgtttaaccactttggtcctaactgcaaccagagaatgccacgagtg
agacatggatatgcgcatgtggcgaataactattaccaaggatggactcagtacgcaata
ggaggaagcatgagccctcgcgtgaagagcgaatcaaactacttcgtcgcaccagaatcc
gggcgcaaagagataacttggaagaaacatagccagggtgataaaatgcagtggaatttc
tactcggtgaatgattatatggagaacggagcttgtttcggcctaaggaaaggaattgga
aaagcccggcccaattacggccgatctcaaaggttcacagtagcggacgctaagaccgtt
aaaaaactcacttcttcagctggagcattacactgcaccagaaactccgtctgttag
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