Brassica oleracea (wild cabbage): 106318897
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Entry
106318897 CDS
T04124
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106318897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106318897
03041 Spliceosome [BR:
boe03041
]
106318897
03009 Ribosome biogenesis [BR:
boe03009
]
106318897
03016 Transfer RNA biogenesis [BR:
boe03016
]
106318897
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106318897
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106318897
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106318897
Complex C
U4/U6.U5 tri-SnRNP related factors
106318897
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
Helicases
106318897
Transfer RNA biogenesis [BR:
boe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106318897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
106318897
NCBI-ProteinID:
XP_013612512
UniProt:
A0A0D3E5F9
LinkDB
All DBs
Position
C9:14918061..14922839
Genome browser
AA seq
991 aa
AA seq
DB search
MGSVKRKSVEESSDCAPPQKLQREDDDSTQIINEELVGCVHDVSFPENYLPPAPSAQGDN
KPPAKEFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLRENQRVIYTS
PIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEVMREVAWI
IFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYT
DYRPTPLQHYVFPAGGSGLYLVVDEKATFHEDSFQKSLNALVPANDADKKRENGKSHKGL
MLGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMDLNSDDEKDSVETI
FTSAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKM
EPAVAKSMLKGSADSLNSAFHLSYNMLLNQLRSEDGDPENLLRNSFFQFQADRAIPDLEK
QIKALLEERDSMVIEEEESLKKYYNLILQYKSLKKDIREIVFSPKYCLPFLLPNRAVCLD
CANDDGEPQSFSIEDKDTWGVIMKFNRVKSLSEDDDNRRPEDANYTVDVLTRCLVSRDGA
GKKKMRPVPYKERGEPVVVSVPLSQIKSLSSAIMNIPKDYLQLEARENALKKVSELLSRH
PDGIPLDPEVDMKIRSSSYKKTVRRLEAVENLFEKYKIAKSPLIAEKLKVLHMKEELTAK
IKSLKKAVRSSTALAFKDELKARKRVLRRLGYITSDGVVELKGKVACEISSAEELTLTEL
MFSGVFKEAKVEELVSLLSCFVWRERLPDAAKHREELDLLFIQLQDTARRVAEVQLDCKV
DIDVESFVHSFRPDIMEAVYAWAKGSKFYEIMEIARVFEGSLIRAIRRMEEVLQQLIVAA
KSIGETELEGKLEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggctcggtgaagagaaaatcagtggaggaatcttcagattgtgctccgccgcagaag
cttcagagagaagatgatgattccactcagatcatcaacgaagagctcgtgggctgcgtt
cacgacgtctccttccctgaaaactaccttcctcctgctccctccgctcaaggagacaac
aagccaccggccaaagagttccctttcaccctcgactccttccagtctgaagctatcaag
tgtctcgataatggcgaatctgtcatggtttcagctcatacatcagctggtaaaacagtt
gtggcatcctatgctatcgccatgtctctgagggagaaccagagggttatttacacctct
cctataaaggcattgagcaatcagaagtacagagatttcaaagaagagttttctgacgtt
ggtttgatgactggggatgtcacaattgatcctaacgcctcttgtctggtcatgaccaca
gagatcttgcgtagcatgcagtataaagggtcagaggtaatgagggaggtggcttggatt
atttttgatgaggtgcattacatgcgtgatagtgaaagaggtgtggtttgggaagagagt
attgttatggctcccaagaattctcgttttgtgtttctctctgcaactgttcctaatgcc
aaggagtttgctgattgggttgcaaaggttcacaaacagccatgccatattgtttacact
gattatcgtccaacaccgcttcagcactatgtattccctgccggaggaagtgggctttac
ttggttgtggatgaaaaggctacattccacgaggatagcttccagaagtctcttaacgca
ttggttcctgctaatgatgctgacaagaaaagagagaatggaaagtctcataaggggttg
atgcttggaaaacttggtgaagaaagtgatatcttcaaattggtgaagatgattattcag
cggcaatatgatccggtgattttgtttagtttcagcaaaaaggaatgtgaggcacttgct
atgcagatgtctaagatggacttaaacagtgacgatgagaaagattccgtggagacaatc
tttactagtgcaatcgatatgctttcagatgatgataagaagctacctcaggtttcaaat
attttacctatcttaaaacgtggtataggcgttcatcattcgggtctgcttcctatcttg
aaagaagtgattgagatattgtttcaagaaggtctgattaagtgtttgtttgcaacggag
acatttagtattggattgaacatgccggcaaagacggttgtgttcacaaatgtgcgcaag
ttcgatggagacaagttccggtggttatctagtggtgagtacattcagatgagtggtcgt
gctggacgtcgaggtattgacaaacgaggtatctgcatcctcatggttgatgagaagatg
gaacccgcggttgctaaatcaatgctcaaaggcagtgctgattctttgaacagtgccttc
catttgagctataacatgcttctaaaccagttgcggagtgaagatggtgatcctgagaat
cttctccgcaactcattctttcagtttcaagctgaccgtgctatccctgatctcgagaag
caaataaaagccctcctagaagagagagactctatggtgattgaagaagaagaaagcttg
aagaaatattataacttgattttgcaatataagagtctgaagaaggatatacgtgaaatt
gtgttctctccaaagtactgcttaccctttttgctgccaaacagagctgtttgtctagat
tgcgctaatgatgatggagagccacaatcattcagcattgaagataaggatacctgggga
gtgataatgaaattcaacagagtcaaaagcttatctgaagatgatgataatagaagacca
gaggatgcaaactacaccgtagatgtactgactagatgtttggtcagcagagatggtgct
ggcaaaaagaaaatgaggcctgtgccatataaagaacgtggtgagcccgttgtggtctct
gttcctttatctcagattaagagtttaagcagtgcaatcatgaatataccgaaagattat
ttacaacttgaagctagagagaatgctctgaagaaggtttccgagttgctctctagacat
cctgatggaatacccctagatcctgaggttgatatgaagattcggagcagctcatacaaa
aagactgttcggcgattggaggctgtggaaaacctatttgaaaaatacaaaatagcaaaa
tctcccctcatagcagagaagctgaaagttctacacatgaaggaagaactaacagccaag
atcaaatcacttaagaaagctgtccgatcctcgacagcgttggcgtttaaagatgaactt
aaggccagaaagcgtgttttacgaaggctaggatacatcaccagcgatggtgttgtggag
ttgaaggggaaggttgcatgtgaaatcagtagtgcagaagagttgacattaacggagcta
atgttcagtggtgtcttcaaggaagcaaaggtggaggagttggtttctctcctctcttgc
tttgtgtggcgagagaggctccctgacgcagccaaacacagagaagaactcgacttgctc
ttcatacagttacaagacacagccaggcgtgtcgctgaagttcagctcgactgcaaggtg
gatatcgatgtggagagttttgtgcactcgttcagaccggatataatggaggcggtgtat
gcgtgggcaaaagggtccaagttttacgagatcatggagattgctcgtgttttcgaaggg
agcttgatcagagcgataaggagaatggaggaagttctgcaacagctcatagtggctgca
aaatccattggagaaacagagcttgaaggtaaactagaagaagctgtttccaagatcaag
agagacattgttttcgcagcatctctctacttgtga
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