Brassica oleracea (wild cabbage): 106319173
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Entry
106319173 CDS
T04124
Name
(RefSeq) flowering time control protein FY-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106319173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106319173
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106319173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SCAP
eIF2A
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_RIG_1st
SEO_C
WDR54
Motif
Other DBs
NCBI-GeneID:
106319173
NCBI-ProteinID:
XP_013612879
LinkDB
All DBs
Position
C2:complement(3021459..3025801)
Genome browser
AA seq
644 aa
AA seq
DB search
MYGDSMQQQLPPMQHPPMMRQPSASSTNINPEYHHSSAPNHFDSHVDSFGGKRMRKHTQR
RAVDYTSTVMRYIQARTWQRDSRDMTSLQPTPAAAVDMLPPVAYSDNPSTSFAAKFVHSS
LNKNRCSINCVVWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSHNDI
WMVSGDDGGTIKYWQSNMNNVKANRTAHKESVRGISFCKTDLKFCSCSDDTTVKVWDFAK
CQEEISLTGHGWDVKCVDWHPTKSLLVSGGKDQLVKIWDTRTARELSSLHGHKNMVLSVK
WNQNGNWLLTASKDQIVKLYDIRTMKELESFRGHKKDVTSLAWHPIHEEYFVSGSADGSV
CHWIVGHENPQIEISNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWSRNRPADNPRDALT
MQNQGYNEQGFSNRLPDSFQPSEASPTPGAFVPGLTRNEGTIPGIGIAMPFDASSQGEHN
QPLPGGMAPPLPPGPHPSLIGSSQQQGYQQQQHHHQGHPQQIPPMPNMPHLQRPPPSHMP
LRPHHPRPMQMPPHMPPSSMPMSHQIPGPMGMQGSMNPQMSQGHYMGAPSGPFPGPPSSG
GPPMYPQGRGFNRPQMMQGYNNPFQQQPPPLPAGPPPNTNQQHQ
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtacggagattcgatgcagcagcagcttccaccgatgcagcacccgccgatgatgcgt
cagccctccgcctcttccaccaacatcaaccccgagtatcaccattcctctgctccaaat
cacttcgactcacatgttgacagttttggggggaaacgaatgagaaagcatacacagaga
agagctgttgattacacgagcaccgttatgcggtatattcaggctcgaacatggcagaga
gactcaagagatatgacctctttgcaaccaaccccagctgctgcagttgatatgcttcct
ccagttgcctattcagataatccttctacaagctttgctgccaagtttgttcactcgtct
ctaaacaagaatcgttgttcaatcaactgtgtagtgtggacaccttcaggaagacgtctt
atcaccggctcccaaagtggggagttcactctttggaatgggcaatctttcaattttgag
atgattcttcaggcacatgatcaacctataaggtcgatggtgtggagccacaatgacatt
tggatggtctctggtgatgacggaggcacgataaagtattggcagagcaatatgaacaat
gtcaaggctaatagaactgctcacaaggaatccgttcgtggtataagtttctgtaaaaca
gatttgaagttctgttcgtgttctgatgatacaactgttaaagtgtgggattttgccaag
tgccaagaagaaatttcactaaccggccacggttgggatgtcaagtgcgtcgactggcac
cccacaaaatccctactagtttctggtggaaaagatcaacttgtcaaaatatgggatact
agaactgcaagagagcttagctcacttcatggtcacaaaaacatggtgcttagtgtgaag
tggaaccaaaatggcaattggcttttaacagcctcgaaagatcaaatagttaagctctat
gatataaggactatgaaggagcttgaatccttccgtgggcacaagaaagatgtaacatct
ttggcgtggcatccaattcatgaagaatactttgtcagtgggagcgctgacggatccgtt
tgtcattggattgtcgggcatgaaaacccgcagattgaaatctcaaatgctcatgataac
agtgtttgggatcttgcatggcatcctattggatatcttctttgcagtggtagcaatgat
cacacaaccaagttttggtccagaaacaggcctgcagataatcctcgagatgcccttact
atgcagaaccaagggtataatgaacaaggttttagcaatcgcctgcctgatagtttccaa
ccatccgaagcatcgccaactcctggagcatttgttcctggactgacccggaatgagggg
accatcccaggaatcggaatagcaatgccatttgatgcatcctctcaaggggaacataat
caacctcttccaggcggtatggctcctccgctgccacctggtccccacccatcgcttatt
ggaagtagccagcagcaagggtatcagcaacaacaacaccaccaccaaggacatccccag
caaatccctccaatgcccaatatgcctcatcttcagcgaccaccaccgtctcatatgcca
ttgcgtcctcatcatccccgccctatgcaaatgcctcctcacatgccaccttcctcgatg
cctatgtctcatcagatacctggaccaatggggatgcaagggagcatgaatcctcagatg
tcgcaaggccattatatgggtgctccttcgggtccatttccaggaccaccaagcagtggt
ggacccccaatgtatccccaaggacgtggtttcaaccgtccacagatgatgcaagggtac
aacaaccctttccaacagcagccgccgcctttacctgcaggccctccaccaaacaccaat
cagcaacatcagtag
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