Brassica oleracea (wild cabbage): 106319196
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Entry
106319196 CDS
T04124
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106319196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106319196
03036 Chromosome and associated proteins [BR:
boe03036
]
106319196
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106319196
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106319196
PBAF complex
106319196
GBAF(ncBAF) complex
106319196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
106319196
NCBI-ProteinID:
XP_013612907
UniProt:
A0A0D3EFL1
LinkDB
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Position
C9:49165257..49167614
Genome browser
AA seq
538 aa
AA seq
DB search
MSANNNNPQKPQQGSAPSPFGVNPGMASASVPGNQGFTQSHMAPNFPAQFQFSQAQAMAH
AQAQAQSKAQAQFQAQMQAGMTMNQGQGSQGIGGVLGSSSPSMTPGSLNMKRFQQRPPMR
PPSGFPASNNTVSPMRTMELTPAARKKKMKLPEKSLQERVAAILPESALYTQLLEFESRV
DAALSRKKVDIQEALKNPPCTQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIVGRIL
EDGVDPDQPGFVQQANPSHPKFSSFFKKVIVNLDQRLYPENSAITWESARSPAPQEGFEI
KRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIISAIWHYVKARKLQNPN
DPSFFNCDAALHKVFGEEKVKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAISACYDV
LVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFI
NALIESQSKDLKVVAGEASRNAEKERRADFFNQPWVEDAVIRYLNRKPAAGNEGPGTW
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaacaacaacaatccacagaagcctcaacaaggctctgcgccttcaccattc
ggcgtaaaccctgggatggcctctgcatctgtccccggaaaccaaggctttactcagtct
cacatggcacctaactttccagctcagtttcaattctcacaagcccaggccatggcccat
gctcaagcccaagcccagtctaaagcccaagcacagttccaagctcagatgcaagcaggg
atgacgatgaaccaagggcaaggctcccaggggattggtggtgtgttgggttcatcttct
ccttccatgactcctggtagcttgaacatgaagaggttccagcagaggccgccgatgcgg
cctccttctggtttccccgcgagtaacaacactgtctcccccatgagaacgatggagtta
actcccgcggcgaggaagaagaaaatgaagcttcctgagaagtcgttgcaggagagggtg
gcagcaatcttgcctgagtctgcgttgtacacgcagcttcttgagtttgagtcaagggtt
gatgctgctttgagtagaaagaaagttgacatccaggaggctcttaagaaccctccttgc
actcagaagacgcttaggatctatgtgttcaactcgtttgcgaaccaaaacaacaccatc
cctgggaatccaaatgccgacccgccgacatggactcttaagattgttggtaggatcctg
gaagatggggtggatccggaccagccaggttttgttcagcaagcgaacccatcgcatcca
aaattctcatctttcttcaagaaggtaatagttaacctggaccagaggctgtatcctgag
aactcggcgatcacatgggagagtgctagatcacctgctccccaggaagggtttgagata
aagaggaaagggaatcaggagtttgcagctactattcggttggagatgaactacgtccct
gagaagttcaagctctctactgcattgatggatgttctcgggattgaggttgagacaaga
ccaagaatcatctctgcgatatggcattacgttaaggcgaggaagctacagaacccaaat
gatccttctttcttcaactgcgacgctgcacttcacaaagtgtttggggaagagaaggtg
aagttcacaatggtttctcagaagatatctcatcacttgtcgcctccaccgccgattcac
ttggaacacaagatcaagctgtcgggaaacaacccggctatatcggcatgttacgatgtc
ctggtggatgtaccgtttccgattcagagggatctgaacaacctgttggccaacgcggag
aagaataaagagattgaggcttgtgatgaagctatatgtgctgccataaggaaaatccat
gagcataggaggagacgtgcgtttttcttgggattcagccagtcgccagttgagttcata
aacgcactgatcgaatctcagagcaaggatctgaaggtggtagcgggagaagctagtcga
aatgctgagaaagaacgtcgagcagacttcttcaaccaaccttgggttgaagatgcagtt
atacgttacttgaaccggaagccagcagctgggaacgaaggaccagggacctggtga
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