KEGG   Brassica oleracea (wild cabbage): 106319287
Entry
106319287         CDS       T04124                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
boe  Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:boe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:boe04121]
    106319287
   03400 DNA repair and recombination proteins [BR:boe03400]
    106319287
Enzymes [BR:boe01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106319287
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106319287
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    106319287
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 zf-RING_5 ResIII zf-rbx1 zf-RING_UBOX zf-ANAPC11 DEAD RING_XB3-XBAT31 Prok-RING_4 AAA_34 zf-Nse GNT-I zf-C3HC4_4 zf-RING_10 HDA2-3 TRAF3_RING
Other DBs
NCBI-GeneID: 106319287
NCBI-ProteinID: XP_013613028
LinkDB
Position
C9:complement(52945067..52948027)
AA seq 848 aa
MSRLLLHFSSSPMANEDDSPSSAQQSQDEISERYMVGFIIANIVGLKYYSGRINGRELVG
LVREPSNLYDENAIRVLNTRSLQVGHIERAVAAVLSPLIDSRKILVEGIVPNTRSSSNRF
KIPCQVHVFAKLEETADVKSAISRAGLVLISDSDTSFGLSEAVVVKERMGGGGEKKSVDK
IFKLVDENVKQKEKMVEVEPPREVIKSELFAHQKEGLGWLLNREKDGELPPFWEEKGGDF
VNVLTNYRTDKRPEALRGGVFADDMGLGKTLTLLSLIAFDRYGDASTSTEETFDVGEKKG
RKRGRGKSSESVARKKVKSDEVVSQKTTLIVCPPSVFSAWVTQLEEHTVPGSLKVYMYHG
GERTDDVNELMKYDIVLTTYSTLAVEEAWEDSPVKKMEWLRIVLDEAHTIKNANAQQSKA
VCNLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKNGLSR
LQVLMATISLRRTKEKSSIGLPPKTVGTCYVELSAEERQLYDHMEGEAKGVVQNLINSGS
LMRNYSTVLSIILRLRQLCDDISLCPPELRSLTSLTSIEDVTDRPELLQKLVAILQDGED
FDCPICISPPRDIIITRCAHIFCRSCILQTLQRTKPSCPLCRGSLTQSDLFNAPPPPEAP
DNDGGETKPSTKSSKVTALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTVL
RLDGAMTVKKRTQVISDFGKPELTGPVVLLASLKASGAGINLTAASRVYLFEPWWNPAVE
EQAMDRIHRIGQKQEVKMIRMIVRNSIEESVLELQQKKKNLANEAFKRRRGKDQREFNVE
DVIALVSL
NT seq 2547 nt   +upstreamnt  +downstreamnt
atgtctaggttacttctacacttctcttcctctcccatggcgaacgaagacgactccccc
tcctccgcgcagcaatctcaggacgaaatctcagagcgatacatggttggattcatcatc
gcgaacatcgtagggctaaagtactactcgggacgaatcaacggccgagaattagtcggc
ctcgtccgagagccttcgaatctctacgacgagaacgcaatcagagtcctcaacacgcga
tccctccaagtgggccacatcgagcgcgccgtcgccgccgtcctctcgcctctgatcgac
tctcgcaagatcctcgtcgaaggcatcgtgcccaacactcgctccagctccaacaggttc
aagatcccctgccaagttcacgtctttgcgaagctggaggagacggcggatgttaaatcg
gcgatttcgcgagctgggttggttttaatttcggattcggacacttcctttgggctgtct
gaggctgtggtggttaaggagcggatgggtggtggtggggagaagaagagtgtggataag
atttttaagcttgttgatgagaatgtgaagcaaaaggagaagatggttgaggttgagccg
cctagggaggtgataaagtctgagcttttcgctcatcagaaggaaggtttgggttggttg
ttgaatagggagaaggatggtgagcttcctccgttttgggaggagaaaggtggagacttt
gttaacgttttgacgaattaccgtactgataaaaggcctgaggctttgcgtggaggtgtg
tttgctgatgatatggggttggggaagactcttactttactttcgttgatagctttcgat
agatacggggatgcatccaccagtacagaggagacttttgatgttggagaaaagaagggt
agaaagagagggagagggaagagcagtgagagtgtagctaggaagaaggttaagtctgat
gaggttgtgtctcagaagacgacgttgattgtttgtccgccttctgtgttctcagcgtgg
gttactcagctggaagagcacactgtaccggggagcttgaaggtgtatatgtaccatggc
ggcgagaggacagacgatgttaatgagcttatgaagtatgatatagtgctgactacttac
agcactttggcggttgaggaagcctgggaagattctcctgtcaagaagatggaatggctg
agaatagttttggatgaggcgcacaccattaagaacgcaaatgctcagcagagcaaggcg
gtttgtaatctgaaggcttctaggagatgggctgtcacaggaactcctatccagaatggt
tcgtttgatttgtactctctgatggcgtttctcaggtttgagccgttttcgataaagagt
tactggcagagcttgattcaacgcccgcttggtcaagggaataagaacgggctctcacgt
ttacaggttttgatggcgacaatctcgttgaggagaacaaaggagaagagttcgattggt
ttaccacctaagactgttgggacttgttatgttgaactatctgcagaagagcgtcagtta
tatgatcacatggaaggagaagccaaaggtgttgtgcagaatctcataaacagtggaagc
ttgatgagaaactactcaacggttttgagtataatcttacggcttagacagctctgtgat
gatatttctctatgccctcctgaactaagatctttgaccagtttaacatctatagaagat
gtgactgataggccagagctgctgcaaaagctggttgctatattgcaagacggcgaggat
tttgactgtcccatttgcatttctccaccgagagacatcatcatcactcgatgtgctcat
atcttttgcaggtcctgcattctccaaacccttcaaagaactaaaccttcttgccctctt
tgccgtggctctctaacccaatccgatctcttcaacgctcctcctcctcctgaagctcca
gataacgacggaggagagaccaaaccttcaaccaaatcctcaaaggtcacggctctacta
tcacttctcatggcgtcaagacaagagaaccccaacacgaagtctgttgtgttctcccag
ttcaggaagatgctgcttctactagaaaccccgctgaaagccgcgggtttcaccgtctta
cgcttggatggggcaatgactgtgaagaaacggactcaagtcatttcagactttgggaaa
ccggagttaaccggacctgtggtgttgcttgcgagcctcaaggcttctggcgctggtata
aacttaactgcagcttcgagagtttacctgttcgagccgtggtggaaccctgcagttgaa
gaacaggccatggacaggattcataggattgggcagaaacaggaggttaaaatgattagg
atgattgtgaggaacagtatcgaagagagtgtccttgagcttcagcagaagaagaagaat
cttgctaatgaagcttttaaaagaaggcgtgggaaggatcaaagagagtttaacgttgaa
gacgtgatcgctctcgtgtcactctga

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