Brassica oleracea (wild cabbage): 106319409
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Entry
106319409 CDS
T04124
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106319409
09123 Folding, sorting and degradation
03018 RNA degradation
106319409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106319409
03041 Spliceosome [BR:
boe03041
]
106319409
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106319409
mRNA degradation factors
5'-3' decay
Lsm complex
106319409
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106319409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
106319409
NCBI-ProteinID:
XP_013613180
UniProt:
A0A0D3E145
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Position
C9:3098986..3100859
Genome browser
AA seq
129 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGARGRGRGAPMAKMSG
NRGAGRGRG
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcgctactcaagactgctcaaggacatcccatgcttgtggagctcaag
aatggagagacatacaatgggcatttagtaaattgcgatacgtggatgaacatccatctg
cgtgaagttatctgcacatcaaaggatggagacaggttttggaggatgccggaatgttat
atccgtggtaacactatcaagtaccttcgtgttccagatgaggtgattgataaagtacag
gaggagaagacccgcacagataggaaaccaccaggggttggacgtggaagaggacgtggt
atggatgatggaggggccagaggacgaggccgaggagctccaatggctaagatgagtggc
aacagaggagcagggcgtgggcgtggttga
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