KEGG   Brassica oleracea (wild cabbage): 106319409
Entry
106319409         CDS       T04124                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106319409
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106319409
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106319409
   03041 Spliceosome [BR:boe03041]
    106319409
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106319409
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106319409
Spliceosome [BR:boe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106319409
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 106319409
NCBI-ProteinID: XP_013613180
UniProt: A0A0D3E145
LinkDB
Position
C9:3098986..3100859
AA seq 129 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGARGRGRGAPMAKMSG
NRGAGRGRG
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcttcctctttcgctactcaagactgctcaaggacatcccatgcttgtggagctcaag
aatggagagacatacaatgggcatttagtaaattgcgatacgtggatgaacatccatctg
cgtgaagttatctgcacatcaaaggatggagacaggttttggaggatgccggaatgttat
atccgtggtaacactatcaagtaccttcgtgttccagatgaggtgattgataaagtacag
gaggagaagacccgcacagataggaaaccaccaggggttggacgtggaagaggacgtggt
atggatgatggaggggccagaggacgaggccgaggagctccaatggctaagatgagtggc
aacagaggagcagggcgtgggcgtggttga

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