Brassica oleracea (wild cabbage): 106319700
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Entry
106319700 CDS
T04124
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04120
Ubiquitin mediated proteolysis
boe04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106319700
04120 Ubiquitin mediated proteolysis
106319700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106319700
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106319700
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106319700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_5
zf_RING_Vps8
zf-RING_11
Prok-RING_4
DUF5320
zf-RING_Vps41
PHD_NSD
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
106319700
NCBI-ProteinID:
XP_013613534
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All DBs
Position
C2:complement(14555913..14558601)
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AA seq
461 aa
AA seq
DB search
MIRLRAYAGISTLATLSVIYHAFSSRGQFYPATVYLSTSKISLVILLNMGLVLMLALWNL
VKLVFLGSLREAEVERLNEQSWRELMEILFAVTIFRQDFSVGFLSLVVTLLLIKALHWMA
QKRVEYIETTPSVTLLSHVRIVSFMVFLLILDGLFTYTSIRQYIQTPKASMSVFFTFEYM
ILATTTLSVIVKYAFYVTDLVMEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNYG
LPLHLIRELYETFRNFKIRVTDYLRYRKIASNMNDRFPDATPDELSSNDATCIICREEMT
SAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPTENATSTASAAHQVSLQQQGTGTGT
SSSDGQSSSVAASGNLSRHEARVRAAASAASIYGRSFVYPSSENTLVWSQGHSSLPQAEL
ESQKRCLESQIEVLQNQLRLLKEPAATTVDIKGKSVVETAE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgattcggctaagggcttacgcggggatcagcaccctcgcaacactgtccgtgatctat
cacgctttcagcagccgtggtcagttctacccagccaccgtctatctatccacatccaag
atcagtctagtgatccttctcaacatgggcctcgtcctgatgctcgccttatggaacctc
gtcaagctcgtgttcctcggctccctcagagaagccgaggtggagcgtctgaacgagcag
tcctggagagagctcatggagattctcttcgccgtcactatcttccgacaggacttctcc
gttgggtttctctctttggtcgtgactctcctgctgatcaaggccttgcactggatggct
cagaagagggtcgagtatatcgagacgactccttccgtgaccttgctctcgcacgttcgc
attgtttctttcatggtgtttctcctgatcttggatggtctctttacgtatacttctata
cggcagtatattcagacgcccaaggcttccatgtcggtcttcttcacgtttgagtatatg
attctggcgactacaactctatctgtgattgtgaagtatgccttctatgtcacagatctg
gtcatggaaggtcaatgggaaggaaagcctgtatatactttctatttggagcttgttcgt
gacttgcttcacttgtccatgtacctctgcttcttccttatgatcttcatgaactatgga
cttccgttgcatctaataagggagctctacgaaacattcagaaacttcaagatccgtgtg
actgattacctccggtatcgtaaaatcgcttccaatatgaacgatcggtttcctgatgca
actcctgatgaacttagttcaaatgatgccacctgtattatatgccgtgaagaaatgacc
tcagcgaagaagttagtatgtggccatctgtttcatgtacactgtcttcggtcgtggttg
gaacgacagaacacgtgtcccacctgcagagcactggttgtaccaactgagaatgctaca
tcaacagcttctgcagcacaccaagtatccttgcagcagcagggaacaggaacggggact
tcaagttcagatggccagagttcttcggttgctgcaagtggtaatttgagcaggcatgag
gctagggttcgagctgctgcttctgcagcgtccatatatgggagatcctttgtttatcca
tcttctgaaaacacacttgtctggtctcaaggccattcgtcgcttcctcaagcagagcta
gaatctcagaagagatgtctcgagtcccaaattgaggtattacaaaaccaactacgtctt
ctaaaggagcctgctgcaactactgtagatattaaaggaaagtcggttgtggaaacggct
gagtga
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