Brassica oleracea (wild cabbage): 106321088
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Entry
106321088 CDS
T04124
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106321088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106321088
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106321088
Spliceosome [BR:
boe03041
]
Complex C
Other components
Step II factors
106321088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
S1
AAA_19
nSTAND3
Flavi_DEAD
Cas3-like_C_2
AAA_30
TsaE
AAA_16
PhoH
Sigma54_activ_2
SLFN-g3_helicase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
106321088
NCBI-ProteinID:
XP_013614859
UniProt:
A0A0D2ZU97
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MKSTPKDKQFLAAGMKKLKKSEEDKGLAIKDTKVKVTQREEDRNSGGDDRRDGYRDRNRG
DDRRSDRHRGRRSGGGGRSDNEPELYQVYKGRVSRVMEFGCFVQFDRFRGKEGLVHVSQM
AKESLVKRDMQVYVKVVSGGGKYSLSMKDVDQNTGRDLRRSNPSYRTKVTKTGISGIRIV
EESPSRRRPLKKKMSSPDRWEAKQMIASGALKATEFPDYYDEEDGDGMLEVEIEMNEEEP
AFLQGQTRYSVVDMSPLKMFKNPQGSLSRAAALQSALTKERREMREQQQRRMIDSIPKDL
NRPWEDPMPETGERHLAQELRGVGLSANGGMPEWKKDAFGKTPSFGQRRSKLSQRESLPI
YKLKKELIQAVDDNQVLVVIGETGSGKTTQVTQYLAEAGYTRKGKIGCTQPRRVAAMSVA
KRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSNYSVIMLDEA
HERTIHTDVLFGLLKKLLKRRPDLRLIVTSATLDAEKFSGYFFDCNIFKIPGRSFPVEIL
YSKQPESDYLDAALITLLQIHLTEPEGDILLFLTGQEEIDSACQSLYEKMKNLGKNVPEL
IILPVYSALPSEMQSRIFDPPPPGTRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNP
KQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFRNEMPPTSIPEIQRINLGM
TTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEP
PLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPRDKQAQADQKRAKFFQPEGDHLTLLA
VYEAWKANNFSGQWCFDNFIQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTRIRKAI
TAGFFFHGARKDPQEGYRTLVENQPVYIHPGSALFQRQPDWVIYHDLVMTTKEYMREVTV
IDPKWLVELAPRFFKVAYPTHMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcacaccaaaggataagcaattccttgcagctggcatgaagaaactaaaaaaa
tccgaggaggacaaaggcttagcgattaaggatactaaggttaaggtcactcagagagag
gaggatcgtaacagtggtggagatgatagaagggatgggtatagagataggaatcgtgga
gatgatagaagaagtgataggcataggggaagaagatcaggtggaggcggaagaagtgat
aacgagcctgagttgtatcaggtttacaaaggtagagtgagtagggtgatggagtttggg
tgctttgttcagtttgataggttcagagggaaagaaggtctagttcatgtttctcagatg
gctaaagagagtttggtgaagcgggatatgcaagtgtatgtaaaagttgtatcgggtggt
ggtaagtatagtctttccatgaaggatgttgatcagaacacgggtagagacttgaggagg
agtaatccatcttatagaacaaaggtcaccaagactgggatttcagggatccggattgtt
gaggagagtccttcacgtcgtaggccactgaagaagaagatgagctcccctgatagatgg
gaagcgaagcagatgattgcttctggtgctttgaaagcgactgagtttcctgattattat
gatgaggaggatggagatggtatgcttgaggttgagattgagatgaacgaagaagaacct
gctttcttacaaggccagaccaggtactctgttgttgacatgtctcctctcaagatgttc
aaaaatccacaaggctccttgagtcgtgctgctgcacttcagtctgcgctcaccaaggag
aggagagagatgagggaacagcagcagagaagaatgattgactctatccccaaggatctg
aatcgtccttgggaagaccctatgcctgaaactggtgagaggcatctcgctcaggagctt
agaggtgtcggactatctgctaatggcggcatgcctgagtggaagaaggatgctttcggg
aaaactccatcttttggacaaagaagatcaaagctttcgcagagggaaagccttcctata
tacaagctgaagaaggagctgatacaggctgtggatgataatcaagtgttggtggtcatt
ggtgaaactggttcagggaagacgacacaggtgactcagtatcttgccgaagcaggttac
actaggaaaggaaagattgggtgtacgcagccacgtagggtcgcggcaatgtccgttgca
aagagggtagctgaggagtttggttgtcgcttgggagaggaggtagggtatgctattcgg
tttgaggattgtactggaccagatacggtgatcaagtacatgactgatggtatgcttctt
agggagattctgattgatgaaaacctctctaactactctgttataatgcttgatgaagct
catgagcggacaattcacactgatgtcttgtttggtcttctaaagaagctgttgaaacgc
aggcctgaccttcgtctgattgtcacatccgccacattagatgcagagaaattctctggg
tatttcttcgactgcaacatctttaaaattcctggaagaagcttccctgtagagattctg
tatagcaaacagccagaaagcgattacttggatgcagctctgatcacacttcttcagatt
cacttgactgagccagagggcgacattcttctctttctgacgggacaggaagagattgat
tctgcatgtcagtctctgtacgagaagatgaaaaatctaggtaaaaacgttcctgaactc
atcatactacctgtttacagtgcccttcctagtgaaatgcagtctagaatatttgatcct
cctcctcctggtacccggaaagtagttgtagctacaaatattgcagaagcttctttgaca
atagatggaatatattatgttgttgatcccgggtttgcaaagcagaacgtgtataatcca
aagcaaggactagaatcgcttgtcataactccaatctcacaggcatcggcaaagcagaga
gctggccgtgctggtcgtactggtcctgggaaatgttaccgtctctacacggagagcgca
ttccgtaatgagatgcctcctacatcaatccctgaaatccagaggattaacctaggaatg
acaacccttaccatgaaagcgatgggtatcaatgacctgctgtcgtttgacttcatggat
ccaccccaaccgcaagccttgatctctgctatggaacagctgtacagcctgggagctttg
gatgaggaaggtctgttgaccaagctgggtagaaaaatggctgagtttcctctcgaacca
ccgctctctaagatgttgctagccagtgtggatcttgggtgcagcgatgagattttgacc
atgattgctatgatccagacgggcaacatattttatagaccaagagacaagcaagctcaa
gcagaccagaagagggcaaagtttttccagcctgaaggtgatcacttgacattgctagct
gtatatgaagcttggaaggctaacaacttctctggccaatggtgttttgacaacttcata
cagtcacgatcgttacgacgtgctcaagacgtgaggaaacagcttctcagcattatggac
aaatataaactagacgtggtaagcgcggggaagaacttcaccaggataaggaaagcaatc
acagcaggattcttcttccatggagcaagaaaagatccgcaggaaggttacaggacgcta
gtggagaatcaaccggtttacatacacccgggcagtgcattgttccaaagacaaccagat
tgggtgatatatcatgatcttgtgatgacgaccaaggagtacatgagagaagtgaccgtg
attgaccccaagtggcttgtggagctagctccaaggtttttcaaagtggcttatccaacc
catatgagcaagcgtaagcgccaggaacgcatagagcctctgtatgatcgttatcacgag
cctaactcatggcgtctcagcaaaagacgtgcttga
DBGET
integrated database retrieval system
