Brassica oleracea (wild cabbage): 106322616
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Entry
106322616 CDS
T04124
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106322616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106322616
03036 Chromosome and associated proteins [BR:
boe03036
]
106322616
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106322616
Coactivators
SAGA/TFTC/STAGA complex
106322616
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106322616
STAGA complex
106322616
TFTC complex
106322616
SAGA complex
106322616
SLIK complex
106322616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
RAB3GAP2_N
WD40_like
LisH
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
106322616
NCBI-ProteinID:
XP_013616142
UniProt:
A0A0D3AXR8
LinkDB
All DBs
Position
C2:complement(49678592..49683335)
Genome browser
AA seq
664 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSAAKHLQESLHNNNGSSFSSIDYPNDPELTKLIRSFSQSE
NDPSRYREGYSKLRSWGYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARSFFNSFR
KDHEMVHLRDLQKLGGVLAPSHLQEMEFARSLRQSKINIKICQYSYDLLIQYLHRTESTL
MLGIINEHINFQVYSGQPNSASDDIEAVTIVGSFHEIADHVNQKEIHWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKAGDDSKKRSAEIGKQGSSTKKLKKDKAGAATTKVARQETSTVL
SSMPRVKPELAMPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNSSSISH
DGSLVAGGFSDSSIKVWDMARIGQAGSCALQDENNQTVGVNGRRNYTLLVGHSGPVYSAT
FSPPGDYVLSSSADTTIRLWSTKLNANLVCYKGHNHTVWDAQFSPFGHYFASCSHDRTAR
IWSMDRMQPLRMMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRS
MVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWTLSYSGEGSLLASGS
ADCTVKLWDVSSSTKLTKAEEKNGNSNRLRSIRTFPTKSTPVHALRFSRRNLLFAAGAVS
KHSS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtagacgagttcgtcatgggctacttgaagaagaaaggcttcaac
agcgctgctaaacatctccaagaatctcttcacaataacaatggcagcagcttcagctct
atcgattatcccaacgatcctgagctcaccaagctcatccgctccttttcccaatcagag
aatgatccaagtcggtaccgtgaaggttacagcaagctaaggtcatggggctataactca
cttgatctttataagcatgagttgcttcgagtgatgtatcctgtgtttattcattgttat
atggatctagtggggaaaggacacactcaagaagcgagatccttctttaacagcttccgc
aaggatcatgaaatggtacatttacgggatcttcagaagctgggaggcgttcttgctcca
tctcatctgcaggagatggagtttgctcgttctcttagacaaagcaagatcaacatcaaa
atttgtcagtattcgtatgatctgttgattcagtatctacatagaacagagtctactctg
atgcttggtattatcaacgagcacatcaatttccaagtctactcaggacagcctaactcc
gcatctgatgacatagaggctgtcaccattgttgggagttttcatgagatagctgatcac
gtcaatcaaaaagaaatacactggggattgcttgaggactcgctggaagatcgcctggag
aagacgggaggtctactgtctgattccgagaagggacaaggagaaagtaaagctggggat
gatagtaagaaaagatccgccgaaattggaaagcaaggctcttccacaaagaagttaaag
aaggacaaagcaggagctgcaacaacaaaagttgcacgtcaggagaccagcacggtgttg
tcgtcgatgccacgtgtgaaaccggaacttgccatgccagtaatgtctacggatgtagag
gaatcgatccttgaagacctgagaaaccgtgtgcagttgagtagcgtcgcaatgccatct
gtcagcttttatacatttgttaatactcataacgggttaaacagttcatctatatctcac
gatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggacatggcg
aggataggacaagctggcagttgtgctttgcaggatgaaaataatcaaaccgttggagta
aatggcagaagaaattatacattattagtgggacactcagggccagtgtactcggccact
ttcagtcctcccggagattatgttttatcttcttcagcagatacaacaataaggctgtgg
agcacaaaattaaacgccaatctcgtgtgctacaagggacataatcacactgtatgggac
gcccagtttagcccttttgggcattactttgcaagctgttctcatgatcgtactgcacgg
atttggtcaatggatagaatgcaacctctgcgtatgatggcagggcatctctctgatgtt
gattgtgtacagtggcatcctaattgtaactacattgcaaccggttctagtgataagacg
gttagactctgggatgtacaaacaggggaatgtgtcaggatattcattgggcacaggagc
atggttttgtcattggcgatgtcaccagatgggagatatatggcctccggtgatgaagat
ggaaccataatgatgtgggacctctcaacagctcgctgcatcacacctctcatgggccat
aactcatgtgtctggactctctcttacagcggcgagggctctcttctggcttctggatct
gcagactgcacagtgaagctgtgggacgtctcctcaagtaccaaattgacaaaggctgag
gaaaaaaatgggaactcaaacagactgcgatcaatcagaactttccccaccaagtccaca
ccagttcacgctctccgattttctcggagaaatctgctgtttgctgcaggagcggtctct
aaacactcgagctga
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