Brassica oleracea (wild cabbage): 106324526
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Entry
106324526 CDS
T04124
Name
(RefSeq) nucleolin 2-like
KO
K13126
polyadenylate-binding protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106324526
09123 Folding, sorting and degradation
03018 RNA degradation
106324526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106324526
03041 Spliceosome [BR:
boe03041
]
106324526
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106324526
mRNA cycle factors
Stress granule specific factors
106324526
Spliceosome [BR:
boe03041
]
Complex C
Other components
Complex C specific factors
106324526
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_11
DUF8400
RRM_MUD2_C
Nup35_RRM_2
RRM_ESF1
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
106324526
NCBI-ProteinID:
XP_013617937
LinkDB
All DBs
Position
C2:complement(50274536..50280206)
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AA seq
467 aa
AA seq
DB search
MKIQALTTQLLDLRQRRTQMMMEHWRGARRGALTATPDRLCFFQNVGQVVRVRLVVDNRG
VFMGDAFVEFASTDQANKALKEKKCDKFNNWRKIVLGVADKGEGAPFFPPKYCIDHKVWY
LEDEEDYLQQEVEEDEDYLQQEKMRHLPILRYYYAFVEFVSPERANLALKKKNGEYLHDH
EILLMKRLEVDTPHSAETVVTVRDKTLFVDHLSKQTKISDIINFFKDVGEVVHVRLMVGK
GTGLMGSGYVEFASAAEAEKAMEKKNGKYLNRRKLYLSFVKEPSRFKYCIDYKVWFEDYV
QRENLLLQENASMEGLDETPDFVEEVSSSKKTLFADISHKKILRFNIPNIISYFEDVGEV
ASVRLIVDRRGISSGCCCVEFATCTESNKAMRINQHVKGIFVKMLEIAPYPFRPKYNLTD
LAENLWYEDELRREGFGLPTRPKPEKEPCVVRKITFCGQRITFSDED
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcaggcgctcacgacacagctgctggacctgaggcagcggaggactcagatg
atgatggagcattggagaggcgctcgaagaggcgcactgaccgcaacgcctgatcgcctc
tgtttcttccaaaacgttggacaagttgttcgtgttcgacttgtcgtcgacaaccggggt
gttttcatgggcgatgcctttgttgagtttgcttctaccgaccaagcaaacaaggcactg
aaagaaaagaagtgtgataagtttaataactggcgcaaaattgttcttggtgtggctgat
aagggagagggagctccattctttccacccaagtattgcatagatcacaaagtttggtac
ctcgaagatgaagaagactaccttcaacaagaagtagaggaagatgaggactaccttcaa
caagaaaagatgagacacctcccaatactgaggtactattatgcctttgttgagtttgtt
tctcctgaacgagctaatttggcgctgaaaaagaagaatggtgaatacttgcacgatcat
gagattttgttgatgaaaagacttgaggtggacactccccattctgctgagacagttgtc
actgtaagagataagacgctctttgttgaccatctctctaagcaaactaaaatatcagat
atcatcaatttctttaaagatgttggagaagttgttcatgttcgtcttatggtaggcaaa
ggtaccggtctgatggggtctggctacgttgagtttgcttctgctgccgaagctgagaag
gcgatggagaagaagaacggcaaatatttaaacagacgcaagctttatttatctttcgtt
aaggagccttcacgattcaagtattgcatagattacaaggtttggttcgaagactatgtt
cagcgagaaaaccttctgctacaagaaaatgcatcaatggaaggacttgatgaaactcca
gactttgttgaggaagtttcatcgagtaagaagactctctttgccgatatctcccataaa
aaaatcctgcgttttaacataccaaatatcatcagttacttcgaagatgttggagaagtt
gctagtgttagacttattgtagaccgccggggcatatcttcgggctgttgctgtgttgag
tttgctacttgtaccgaatcaaataaggctatgcgaattaaccagcatgttaaggggatt
tttgtcaagatgcttgagatagctccataccctttccgacccaagtacaaccttacagac
cttgcagagaacctttggtacgaagacgagcttagacgagaaggctttggtttgccgacc
agaccaaagccggagaaagagccctgcgtcgttcgaaagattaccttctgcggtcagagg
attaccttctctgacgaagactaa
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