KEGG   Brassica oleracea (wild cabbage): 106324668
Entry
106324668         CDS       T04124                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03030  DNA replication
boe03410  Base excision repair
boe03420  Nucleotide excision repair
boe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106324668
   03410 Base excision repair
    106324668
   03420 Nucleotide excision repair
    106324668
   03430 Mismatch repair
    106324668
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:boe03032]
    106324668
   03036 Chromosome and associated proteins [BR:boe03036]
    106324668
   03400 DNA repair and recombination proteins [BR:boe03400]
    106324668
DNA replication proteins [BR:boe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    106324668
  DNA Replication Termination Factors
   ELG1-RFC complex
    106324668
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    106324668
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     106324668
  Check point factors
   HRAD17(Rad24)-RFC complex
    106324668
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_22 DUF815 RuvB_N ABC_tran AAA_5 RsgA_GTPase AAA_23 AAA_29 Mg_chelatase AAA_16 AAA_24 AAA_2 T2SSE ATPase_2 AAA_33 nSTAND3 TsaE nSTAND1 FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 106324668
NCBI-ProteinID: XP_013618078
UniProt: A0A0D3AXA7
LinkDB
Position
C2:48473427..48476773
AA seq 354 aa
MLWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYG
ASADKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR
CLNVRINAPSQEEIVKVLEFVAKKESLQLPHGFAARIAEKSNRSLRRAILSLETCRVQNY
PFADNQVISPMDWEEYVSEISTDMLREQSPKSLFQVRGKVYELLVNCIPPEVILKKLLHE
LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtcgacaagtacaggccgaaatcgctagataaggtcatcgtccatgaggat
atcgcccaaaatctcaagaaattggtaacggagcaagactgtccgcatttgctgttctat
ggaccgtctggctcgggtaagaaaaccctaatcatggcgcttctcaagcagatatatggt
gccagtgctgacaaggtgaaagtggagaacagggcatggaaagtagatgctgggagtaga
actattgatctggagctcactacgttatcaagcaccaaccatgtggagcttactccaagt
gacgctggctttcaggacagatacatcgttcaagagatcattaaagagatggccaagaac
agacctattgacaccaaaggaaagaagggatataaagtgttggtactaaatgaagttgac
aagctctcacgagaagcgcaacattctctgcggagaacaatggagaaatatagctcatca
tgccgtctcatcttatgctgtaacagctcttcaaaggttacagaagccattaagtctcgt
tgtctcaatgtgcggataaatgctccttcacaggaagagatagtgaaagtgttggagttc
gttgcgaagaaagaaagtctgcaacttccccacggttttgctgctcgaatagccgaaaaa
tcaaaccgcagtcttagaagagctattttgtcgcttgagacctgtcgtgtccaaaactat
ccattcgcagataatcaagtgatatctccaatggattgggaagagtatgtttctgaaata
tcaactgacatgttgagggaacagagccctaaaagtttgtttcaggtgcgtgggaaggta
tacgagctgctagttaattgcattccaccagaagtcatactgaagaaacttctgcatgaa
ctgctgaagaaacttgactcagagctgaagcttgaagtctgccactgggccgcatattat
gaacatcggatgagactaggtcagaaagctatatttcacatagaagcatttgtggccaaa
ttcatgagcatatacaaaaacttcctcatttcaacatttgggtag

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