KEGG   Brassica oleracea (wild cabbage): 106324851
Entry
106324851         CDS       T04124                                 
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106324851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106324851
   03036 Chromosome and associated proteins [BR:boe03036]
    106324851
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     106324851
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     106324851
    COMPASS/SET1 complex (yeast)
     106324851
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st WD40_RFWD3 PQQ_3 NBCH_WD40 Beta-prop_NWD2_C WD_LRWD1 Methyltransf_13 MIOS_WD40
Other DBs
NCBI-GeneID: 106324851
NCBI-ProteinID: XP_013618294
UniProt: A0A0D3AJ16
LinkDB
Position
C2:complement(3361119..3363516)
AA seq 332 aa
MSLTELDDGLVRSMAIGAVFSDFGGKIRSVGFHRTDDLLVTSSEDDSLRLFDIANAKQVK
VTYHKKHGTDRVCFTHHPSSFICSSLYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSL
CMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKL
FDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYHGEKKCGFSL
EPSQGTSLEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAM
FVAASTVLTFWIPNDGEAPAPADHSADQQPPQ
NT seq 999 nt   +upstreamnt  +downstreamnt
atgtcgttgacggagctagacgacggactggtacgcagtatggccatcggagcagtcttc
tccgacttcggagggaagatacgttcggtggggttccataggactgatgatctattggtg
acgtcgagcgaggacgattcgcttcgtctcttcgatatcgccaacgctaaacaggtgaag
gttacatatcacaagaaacatgggactgatcgtgtatgctttacacatcatcccagctct
tttatttgctcttctctttacaatcttgagtccactggagaatctctgagatatctctca
atgtatgataaccggatccttcgctactttaaaggccacaaagacagggttgtttcgctt
tgtatgtcgcctattaatgatagcttcatgtctggttctttagacagaagtgtcagactc
tgggatcttcgtgttaatgcctgccagggaattctacacctacgtgggagacctgctgta
gcttatgaccaacaaggcctggtgtttgcaattgcaatggaaggaggtgctgttaagtta
tttgattccagatgttatgacaagggtccctttgatacatttctggtgggtggtgatact
gctgaggttaacgatattaaattcagcaacgatggaaaatcaatgcttctcactaccaca
aataacaatatctacgttcttgacgcatatcatggagagaagaaatgtggttttagtttg
gagccttcacagggtacatccctagaagccaccttcacaccagatggcaagtatgttttg
tcaggttcaggagatggaaccttacatgcgtggaacatcgagaacccatctgaggtggcg
aggtgggagaacaacataggagtagtgtcgtgtctgaaatgggcaccgcgtagagcaatg
ttcgttgctgcctctacggttctcactttctggatccccaacgacggcgaggcaccagcc
cccgccgatcattctgccgaccaacaacctcctcagtga

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