Brassica oleracea (wild cabbage): 106325259
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Entry
106325259 CDS
T04124
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106325259
09123 Folding, sorting and degradation
03018 RNA degradation
106325259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106325259
03041 Spliceosome [BR:
boe03041
]
106325259
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106325259
mRNA degradation factors
5'-3' decay
Lsm complex
106325259
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106325259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
M11L
Motif
Other DBs
NCBI-GeneID:
106325259
NCBI-ProteinID:
XP_013618748
UniProt:
A0A0D3AN94
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Position
C2:complement(14900228..14902314)
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AA seq
98 aa
AA seq
DB search
MATTTGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaactactggacttgagtctcttgtcgatcagatcatttcggttattacaaac
gatggacgcaacattgtgggagttctcaaaggttttgaccaggcgactaatataattctg
gatgaatctcatgaacgcgtcttttccacaaaggaaggagtacaacaacttgtgttgggt
ttgtacattatcagaggcgacaacataggtgttattggggagctagacgaagagctcgat
gctagtctggatttttcgaaactaagagctcatcctttgaaacccgtcgtgcattga
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