KEGG   Brassica oleracea (wild cabbage): 106325259
Entry
106325259         CDS       T04124                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03018  RNA degradation
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106325259
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106325259
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106325259
   03041 Spliceosome [BR:boe03041]
    106325259
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106325259
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106325259
Spliceosome [BR:boe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106325259
SSDB
Motif
Pfam: LSM M11L
Other DBs
NCBI-GeneID: 106325259
NCBI-ProteinID: XP_013618748
UniProt: A0A0D3AN94
LinkDB
Position
C2:complement(14900228..14902314)
AA seq 98 aa
MATTTGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcaacaactactggacttgagtctcttgtcgatcagatcatttcggttattacaaac
gatggacgcaacattgtgggagttctcaaaggttttgaccaggcgactaatataattctg
gatgaatctcatgaacgcgtcttttccacaaaggaaggagtacaacaacttgtgttgggt
ttgtacattatcagaggcgacaacataggtgttattggggagctagacgaagagctcgat
gctagtctggatttttcgaaactaagagctcatcctttgaaacccgtcgtgcattga

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