Brassica oleracea (wild cabbage): 106326939
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Entry
106326939 CDS
T04124
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
boe01009
]
106326939
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106326939
03041 Spliceosome [BR:
boe03041
]
106326939
Protein phosphatases and associated proteins [BR:
boe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106326939
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106326939
Spliceosome [BR:
boe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106326939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Nup35_RRM
zf_CCCH_4
PHM7_cyt
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
106326939
NCBI-ProteinID:
XP_013620361
UniProt:
A0A0D3AW98
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All DBs
Position
C2:complement(45594110..45598829)
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AA seq
887 aa
AA seq
DB search
MRETRSSALSMEISVSSPKQSVLSSSDCMSDPEEEHEISEEEDDDDRNHKHRKKEETSSQ
SLEQGSSDQAFSRPFRRNNRHFENGSEHEKRSLGAGGSGHRVQFDNQRSRSNPGRGRGSY
GSWSQRDSRFNHHVDLSSHMVPGMFGGRGMAAQTAPWPGFGMLPGVPNGGLDGFHHLQGP
LGPPLNGPINMGIPRQRCRDFEERGFCLRGDMCPMEHGINRIVVDDVQSLSQFNLPVSVP
GGPHMAASSKPVPAQFGDGNFMNPKGAHGKTNEGGMAVDGMGYGDAYPSAGGTDSYDPDQ
PLWNNSAGETSGALSAPNSHGMDENVAPVDDNNQDGAVNTCGIRESRNNQSGWGRVRNSQ
ANFKEKGDTVLNSSAGLEGQSKEISVSLSRQNNVGGSVAKVVDSSNTLIDAVNNTRTPTQ
KAMRTLFVNGVPHESNRRDLILAHFQKFGKVIDIHIPANSNRAFVQFSKREEAESALRAP
DAVMGNRFIKLWWANRDSIPDNGLSTGNGAFMKGRGVGASGGQNQIPIAAASKSNHVSLT
AKGPAFHPGGAPLSSQQPKPVGVTSGPKVTPLQQKKADTLEQLKETLRKKQEMLDQKRNE
LCKKLATLQKQETGVKDEEADEPDAKRVKVDTASNSGAAIPSPKTESSTEKKGPIKKPLS
IARPSTETPDSKNLKQRPYSYTTSLNTPMVNRYKLDNRTTTIKVVPPLPTGLADVAVLKE
HFSSYGEVSKVELEDNASADSGKDQDETHNKTLAACVTFVKRSAAEKAFANAKSWQEHTL
QLVWVTRQIKKENKSSSDKNNPSVSSDHLSSKNKSAASVSNDPKPEDEVKASSTEEPKST
NVSGDDNTLNEQAAKESDNDNNKSNSESIEGAEKVAAPESNEEQMNG
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgagagagacgagaagctctgcattatccatggagatttcagtttcctctccgaagcag
agcgtgttatcttcatcagattgtatgagcgaccctgaggaggagcacgagatcagcgag
gaggaggatgatgacgatcgcaaccacaagcaccgtaagaaagaagagacgagttctcag
tccttggaacaaggctcttcagatcaggctttctcgcgtcccttcaggagaaacaatagg
cattttgagaatggcagtgaacatgagaaacggtctctaggggcgggaggatcaggacac
cgtgtacagtttgataaccaaagatcaagatcaaaccctggtagaggtagaggaagttat
ggttcttggagtcagcgtgactccaggtttaatcatcatgttgatctctcatctcatatg
gttccggggatgtttggagggagggggatggctgctcaaaccgcaccttggcctgggttt
ggaatgcttcctggagttccgaatggtggcttggatggtttccatcacttgcaagggcct
ctaggaccgccgttaaatggtccaatcaacatgggtattcctcggcagcgatgtagagac
tttgaggaacgtgggttctgcctcagaggggacatgtgtcccatggagcatggaatcaat
cgtatcgttgttgatgatgttcagagtctatcacaattcaaccttcccgtttctgtccct
ggtggacctcatatggcagcttcttccaaaccagtgcctgcacagtttggggatggtaat
ttcatgaatccgaaaggagctcatgggaagaccaatgagggtggaatggctgttgatggt
atgggttatggtgatgcatatcctagtgcaggtggaactgattcttacgatcctgatcaa
cccttgtggaataacagtgctggtgaaacttcaggggcattatctgcaccaaattctcat
gggatggatgagaatgtcgctccagtggatgacaataaccaagatggcgctgtaaataca
tgtggtattcgagaatcaagaaacaatcagtcgggttggggcagagtgcgtaatagtcaa
gcaaatttcaaagagaaaggtgatactgtattaaattcatcagctggtcttgaaggtcaa
tcgaaggagatctcagttagtttatcccgccaaaacaatgttgggggaagtgtcgcaaaa
gttgttgattcatcaaacactttaattgatgcagtgaataatacaagaacaccaacgcaa
aaggcgatgcggactctgttcgtgaatggtgttcctcacgagagcaacagaagggacctc
attcttgcccattttcagaaatttgggaaagttattgacattcacatcccagcaaatagt
aaccgagcatttgttcaattctcaaaacgtgaagaggccgagtctgctctcagggcgcct
gatgctgtaatgggtaaccgctttatcaaactttggtgggcaaatagagatagtatacct
gataatggcctgtccactgggaatggtgcttttatgaagggtcgtggtgtgggtgcttct
ggaggacagaaccagattcctattgctgcagcatcgaaaagcaaccatgtatctcttact
gcgaaagggcctgccttccaccctggtggagctccattatcctctcaacagcctaagcct
gtgggggtcactagtggtcccaaggttacgccgcttcagcagaaaaaagcagacactctt
gagcagttgaaagagacacttcggaaaaagcaggaaatgctggatcaaaagcgtaacgag
ttatgcaaaaagttggcgactcttcaaaaacaagaaacgggtgttaaggacgaggaagca
gatgagccagatgctaagcgcgttaaggtggacacagcctctaactccggtgctgcaatc
ccatcaccaaaaacagagtcatcgactgagaagaaagggcctatcaagaaaccactttct
attgctagaccaagcacagaaacgcccgattcaaaaaacttaaagcaaagaccgtattcg
tataccacaagtttgaacactcctatggtaaataggtataagttggacaaccgcacgact
accatcaaagttgtccctcctttgccaacggggttagccgatgttgctgtcttgaaggaa
catttctcttcttatggcgaggtctcaaaagtggaactcgaagacaatgcatcggctgat
agtggcaaggatcaggatgaaacacataacaaaacccttgcagcctgtgtgacatttgtg
aaacgcagcgcagctgagaaagcgtttgctaatgcaaagtcttggcaagaacacacgttg
cagctcgtgtgggtaacacgtcaaatcaagaaagagaataaaagtagcagtgacaagaat
aatccctctgtttctagtgaccaccttagcagcaaaaacaagtccgctgcttctgtttct
aatgacccgaaaccagaagatgaagtcaaagcctcttctacagaagaaccaaagagcaca
aatgtctctggagacgacaatacattgaatgaacaagcggccaaagaaagcgacaatgac
aacaataaaagtaatagcgagtccatcgagggagctgaaaaggttgcagcgccagaaagt
aatgaagaacagatgaatggttaa
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