Brassica oleracea (wild cabbage): 106326999
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Entry
106326999 CDS
T04124
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A-like isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
boe03036
]
106326999
03400 DNA repair and recombination proteins [BR:
boe03400
]
106326999
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
106326999
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
106326999
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
PTM_DIR17_Tudor
TPR_DNAAF5
Rad9_Rad53_bind
LBR_tudor
Motif
Other DBs
NCBI-GeneID:
106326999
NCBI-ProteinID:
XP_013620444
LinkDB
All DBs
Position
C2:41512874..41522118
Genome browser
AA seq
1617 aa
AA seq
DB search
MALKPEEQLKEFGSKLDPLPSSKDSLLKLFKEAAVCLSELEQSPPASVLQSIQPFLDAII
KPEILKHQDKDVKLLVASCFSEITRITAPEAPYHDDTMRDIFQLIVSSFSGLDDVGGPSF
GRRVVILETVAKYRSCIVMLDLECDELVKEVFTTFLDVARDDHPEVVVSSMQNIMIVLLE
ESEDVQEQLLLILLSRLGRNRSDVSDAARRLAMKVIEQCAPKVESDIKQFLISSLSGDSR
FSTSQIDCHEVIYDLYRCAPQCLSGVAPYLTGELLADELETRLKVVGLVGELFSLPGRAI
SEEFSSVFVEFLKRLTDRVVEVRMLILDHIKKCLLSDPSRAEASQIISALSDRLLDYDEN
IRKQVVAVICDVAASALTSIPIDTIKLVAERLRDKAILVKTYTMERLTELYRVYCLRCAE
GKLGTGDFDWIPGKILRCLYDKDFRSDTIEYTLCSSLFPSDFSVRDKVKHWIDIFSGFDN
VETKALEKILEQRQRIQQEMQKYLAFKQLQQVCLNSADAPEMQKKIQFGFRVMSRAFSDP
PKAEQNFLVLDQLKDANIWKILNNLLDPNTSIVQASKIRDDMLKILSEKHSLYEFLGSLS
IKCSYLLFSKEYVKEMLSEVSARKASKDNLGIQSCMDFLGLLASYCPSLFDGAEEELIGF
LKDDDEMIKECTLKILAKAGGTIRENLIVLSSSVDLLLERICVEGNRKQAKYAVQALASI
TKDDGLKALSVLYKGLVDMLDDKRYQPAVLQSLGCIAQIAMPVFETRETEIVEFIRSKIL
KTESEAVDDEKLSWDVKSEICQLKIYGIKTLVKSYLPLKDAHLRTGVDDLLILLKNILSF
GEISEEIDSSVVDKAHMKLAAAKAILRLSRHWDDKISIDIFHLTLKTPEITFPMAKKIFL
GKVHQYIKDRVLETKYACSFLFDITGSSVLVSEEEKQNLADVIQHSYQTKGRKVSAQTDA
NSVSPYPHSILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISLLLHKEEDGKAED
TDKEQECVPTIISIFNSIKQSEDVTDATKSKNSHAICELGLSVMNQLTQKETDLKGEFTP
VSLPPTLYKPSEKTEGDNSGVGEEKLWLADETVLAHFSSLKLESHADSSVIPQASEHEGM
NDDESDDNEIPLGKIVERLRAQRTKSREGEKNKSVSAEDESGKTDVDVLKMVREINLDHL
RTVDTFESSNGHTHSPGKRSNTGETDQKATKRSAGDGTSVVSVPKRRRSSSGHSPFKFSN
SGSIKELHEERDMDSNDENSNREKRLGSRSSRTKKKIFSENHSEDGNCSDRSRSAESGDR
LKSSSGSMQNRKRKGVTGLAKCSTAEKKMVTDELIGCKIDVWWPMDKRFYEGTVKSYDST
KQKHVILYEDGDVEVLRLDKERWELVDSGKPTKKTKTSKRSSNKKGSSGSKHKNSDALRR
DEDPIPTTPKGKRTPKKYIRHKHPEGTPGSPSLEYEKLESRTKKNRSIAIPVGEAAEETN
EKKMESTTELMTEDQEYGKEAGEEKSESEGKLSKEGEDDDEEKVDLKEAKAESSGNPEGK
ETDVDNSDSEKKQENSDMETEAEAEAEDDAGDADASDNETLGAWRSKVVKSSSKKAA
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggctctgaagccagaggagcagttgaaggagttcggatccaagcttgacccacttcct
tcctccaaagattcattgctcaaactcttcaaggaagctgctgtttgtctttctgagttg
gagcagtctccaccagcgtcagtgctgcagtccatccagccttttcttgacgcaattatt
aaacctgaaattctcaagcatcaagacaaggatgtgaagcttctagttgcgagttgtttt
tctgagataactcgtatcacagcacctgaagcgccttaccatgatgacactatgagggat
atatttcaactgattgtgagttccttctctgggttggatgatgtcggtggaccatcattt
ggaaggagggttgttattctcgaaacggttgcaaaatacaggtcatgtatagtgatgttg
gatctggagtgcgatgagctggtgaaagaagtctttactacatttcttgatgttgctaga
gatgaccatccggaggttgttgtctcatcaatgcaaaatataatgattgttctgttagaa
gagagtgaagatgtgcaggagcagctgttactaattctactctctagattgggcagaaat
agaagtgacgttagtgacgcggcgagaagacttgctatgaaagtcatagagcagtgtgcg
ccaaaagttgaatctgacataaaacaattccttatctcttcattgtctggagatagccgg
ttttccaccagtcaaattgactgccatgaggttatctatgatttgtaccgctgtgctcct
cagtgcctatccggagttgcaccctatctcactggagagcttttggctgatgaattggaa
actcgtttgaaagttgtcggattggtcggagagttgttttccttgcctggacgtgccatc
tccgaagagttcagttcagtttttgtggagtttttgaaaaggctgactgatagagtagtt
gaagttagaatgctcatccttgaccatattaagaagtgtttgctctcagatccttcgaga
gccgaggcttcccaaattatatctgctcttagtgaccggctcttggattatgatgagaat
atccgcaaacaagtcgttgctgttatttgtgatgtggctgcgagtgcactgacgtcgatt
ccaattgacactataaagttggttgctgaaaggctccgagacaaagctatactggtaaag
acatacacaatggaaaggttgactgaactataccgggtatattgcttacggtgtgctgaa
gggaagttaggcactggcgactttgattggattcctggaaaaattttaagatgtctttat
gacaaagatttcagatcagatacaattgaatatactctctgcagttcattgtttccaagt
gatttctctgttagagataaagttaagcactggatagacatattttccggatttgacaac
gtggagacaaaagctttagagaaaatactggagcagaggcaaaggatacaacaagaaatg
caaaaatacttggcattcaagcagctgcaacaggtttgcttaaatagtgctgatgctccg
gagatgcagaaaaagatccaatttggattcagagtcatgtcacgtgcattttctgatccc
ccaaaggctgagcagaactttttggttcttgaccaactgaaagatgctaatatctggaag
atcttgaataatctactcgatcccaacactagcatagtacaagcgtcaaagattcgggat
gatatgcttaaaatactttctgaaaagcatagtctctatgaatttctcggcagtctctcc
ataaagtgttcttatctcctattcagtaaggaatatgtgaaagagatgctgtcagaagtc
tctgctagaaaggcttctaaagataatttgggcattcaatcctgcatggacttcttaggg
cttctcgcaagttactgtccatcactgtttgacggggctgaagaagaactgataggtttc
cttaaagatgatgatgaaatgataaaggaatgtactcttaaaattctggcgaaggcaggt
ggtactattcgggagaatctcattgtgttatcgagttctgtggacctgttgctggagaga
atctgtgtagaaggtaaccgtaagcaggctaagtatgctgtgcaagcactagcatcaata
acaaaggatgatggcttgaaggcgctatctgttttgtacaagggactcgtggacatgctg
gacgacaagaggtatcagccagctgttctacaaagccttggatgcatagcgcagattgcg
atgccagtctttgagactagagaaactgaaatcgttgagtttattagaagcaaaatcctc
aaaaccgaaagtgaagcagtagatgacgagaagttatcctgggatgtcaaaagtgaaatt
tgtcaactgaagatatatggaatcaagacattggttaagagctacttgccgctcaaggat
gctcatcttcgcacgggtgttgatgaccttcttatattactgaaaaacattctttccttt
ggggaaatatctgaagagatagactcaagcgttgttgacaaagcccatatgaaactagct
gctgcaaaggcaatcctccgcctttctagacactgggacgataagatatcgattgatatc
ttccatttaactctaaaaacccctgagataacatttcctatggctaagaaaatattcctt
gggaaagttcatcagtatataaaggatcgagtgttggagacaaagtatgcctgttcattc
ttattcgacatcactggatcaagtgtactggtgtcagaggaggagaaacagaacctggct
gatgtcattcaacattcttaccaaacaaaagggcggaaagtctctgctcagactgatgca
aattcggtttctccctaccctcatagtatcctaccttacttggttcacgcacttgcgcat
cattcttgtcctgacgtcgaaaaatgcaaagatgtgaaggaatatgaaatgatatatcgc
caattatacttgatcatttctctgttactgcataaagaggaagacgggaaggctgaagat
actgacaaagaacaggagtgcgttcccaccattatatctatcttcaatagtataaaacag
tcggaagatgtcactgatgcaacaaagtcaaagaactcacatgcgatctgtgagctcggg
ctgtcagtaatgaatcagttaactcagaaagagactgatctaaaaggggaattcacgcct
gtatcgctgcctccaacactttacaaaccttctgaaaaaactgaaggtgacaactctggg
gttggtgaagagaaattgtggctagctgatgaaactgtcttggcacactttagttctctc
aagttggagagtcatgctgattcatctgtgataccccaagcttcagagcacgagggtatg
aatgatgacgaaagtgatgacaatgaaattcctctgggtaaaatagtagagcgattgaga
gctcagagaaccaagagtagagagggggaaaagaacaaatctgtttcagctgaagatgag
agcggtaaaactgatgtcgacgttttgaaaatggtgagggagataaatctggaccacttg
cgcacggtggatacatttgagtccagtaatggacacacacattcccctggcaagagatca
aacacaggtgaaacggatcagaaggctaccaaaaggagtgctggggatggaacatcagta
gtttcagtccctaaacgccggagatcttcttctggccatagtcctttcaagttctcaaat
agtggctctataaaagagttgcatgaagagagagatatggactcgaacgatgaaaattca
aaccgggaaaagagattaggaagcaggtcttcccgaacgaaaaagaaaatcttctcagaa
aatcatagtgaagatggcaactgcagtgataggagtaggtcagcagaaagtggtgataga
ttgaagtcttcctctggatcaatgcagaaccggaaaagaaaaggcgtcacaggactggct
aagtgctccacagcagaaaagaaaatggtcactgatgagctaatcggttgcaaaatagat
gtttggtggcctatggataagcggttttatgaaggcacggtaaaatcttatgattcgacg
aaacagaaacatgtgatactctatgaggatggagatgtcgaagtccttcgcctcgataaa
gaacgatgggagcttgtagactcgggaaagcccacaaagaagaccaagacatcaaagcga
agttctaataagaaaggatcttctggaagtaagcataagaattcagatgccttgcgaagg
gatgaagaccctattcctaccacgccaaaagggaaaagaaccccaaagaaatacataagg
cataagcacccggaaggaacaccaggaagtccctctttagaatatgagaagctagagagc
agaaccaagaaaaaccgatccattgccattccagtcggtgaagctgctgaagaaacaaat
gaaaagaagatggaatcaaccacagagctgatgacagaggatcaggaatatggtaaggag
gctggcgaagagaaatcagagtccgaaggaaagttgtcgaaagaaggcgaggatgatgat
gaggagaaagttgatttaaaggaggcaaaagcagagtcgagtggaaaccctgaggggaaa
gaaactgatgttgacaactcagattctgagaagaaacaagaaaacagtgatatggagaca
gaagctgaagctgaagctgaagatgatgccggggatgctgacgcttctgacaatgagact
cttggagcgtggagaagcaaagtggttaagtcaagctccaagaaagcagcatag
DBGET
integrated database retrieval system
