Brassica oleracea (wild cabbage): 106327103
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Entry
106327103 CDS
T04124
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106327103
03015 mRNA surveillance pathway
106327103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106327103
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106327103
5.6.2.5 RNA 5'-3' helicase
106327103
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106327103
mRNA cycle factors
Common to processing body (P body) and stress granule
106327103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
SLFN-g3_helicase
nSTAND3
NPHP3_N
Helicase_RecD
PhoH
ATPase
AAA_16
Viral_helicase1
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
106327103
NCBI-ProteinID:
XP_013620595
UniProt:
A0A0D3AUT8
LinkDB
All DBs
Position
C2:41004883..41012299
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AA seq
1218 aa
AA seq
DB search
MDSQPSDLFDTASQPDTAVDAYTFLEFNSQGDSEFDFPEFRSPNAWPTPSDSISVVEPSD
RGGGGVPAADHHSEASSPSSLSAKAGRGGGGSSSQADALAAGIGNLNFEETGDDDGFDYG
KNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHR
DSPLGETILECYNCGCRNVFLLGFISATTDSVVVLLCRDPCLNVNALKDMNWDLSQWCPL
IDDRCFLPWLVKVPYEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPV
QPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPKEEN
ELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRANQGVPIDVNHGFCVDF
VWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQLVRNPLPRRFGVPGLPELNA
SQINAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEK
ISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSD
EKKYKNLKRATEREITQSADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLIPLV
LGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPALSEF
PSNSFYEGTLQNGVTVNERLTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAA
NVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQG
REKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTH
YKEHECLVEGPLNNLKQSMIQFQKPRKMYNDRRPFYGGGAGMIGNDNPNADRRGSRGRAG
GSYMPSGPPSGSRLHPAGYPIPRVPFSPFPGGPPSQPYAIPTRGPVGTGRGSSVGGHLPH
QQATQHNVGTIGPNVNFPLDSPNSQPSPGGPLSQPGYGSQAFRDGFMGGISQDFLGDDFK
SQGSHVPYNMGDYSTQGGYAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGSNDFMSQEYM
PHGAQGLFTQAGFIDSSQDDGQQNPFGVNNPNLQSQGLPNSLYSQPFSHYTQPLNLSGPQ
QSQPPNQGSQNPKPPHNG
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaaccgagcgatctctttgatacggcatctcagcccgatacggcggtggac
gcgtacaccttccttgaattcaattcccaaggcgactcggagttcgatttcccagagttc
cgatcaccgaacgcatggcctacaccgtctgattccatctccgtcgtggagccttccgat
cgcggcggcggaggagtacctgccgcggatcaccattccgaggcctcctcgccttcttcc
ctgtctgccaaggccggacgtggtggtggtggtagcagcagtcaggcggatgcgttggct
gcggggattggaaatttgaacttcgaggagactggtgatgatgacggtttcgattacgga
aagaatgatttcacggagcacgcgtgtaagtattgtggtatctcgaacccggcttgcgtt
gttaggtgtaatgtggcctcctgtagaaagtggttctgcaattcaaggggaaacacctcc
ggctcccacatcgtcaatcatctggttcgagccaaacacaaggaggtttgtctccataga
gacagtccgttgggtgaaacaattctcgaatgctacaactgtggatgtcggaatgtcttt
cttctcggtttcatctcagcaactacagacagtgttgtcgtccttctctgtagagatcct
tgtttgaatgtgaatgctctcaaggatatgaactgggacctaagccagtggtgtcccttg
attgacgataggtgtttcctcccctggcttgttaaggttccgtatgagcaagagcagctg
agggcacgacaaattagtgcacagcaaataaacaaaatagaggaattatggaagacaaat
ccggatgctacccttgaagaccttgaaaaacctggcgtagacgatgaacctcagcctgtt
caacctaagtatgaagatgcttatcagtatcaaaacgtgtttgctcctcttattaaactc
gaagcagattatgacaagatgatgaaagaatctcagagcaaggaaaacctcacagttcgg
tgggatattggtctgaacaagaagcgtgttgcctacttcgtcttcccaaaggaggaaaat
gaattgcgattggtgccgggtgatgaactacgtctacgctactcaggagatgctgctcat
ccagcttggcaatcagttggacatgtggtcaagctaactgcccaagaggaggttgctctt
gaactccgagctaatcagggagttccaatcgacgtgaaccatggattctgtgttgatttt
gtgtggaaaagtacaagttttgatcggatgcagggagcaatgaaaaattttgctgtagat
gaaacgagtgtgagtggttatatttaccatcagctattgggacatgaagttgaggcgcag
ttggtccggaacccacttcctcgacgttttggggtaccaggtcttccagaactgaatgca
tctcagattaatgcggtgaagagtgtccttcagaagcccatcagtttgatccaaggtcca
cctggcacaggcaaaactgtgacttctgctgcaattgtgtatcacatggcaaaacagggc
cagggacaggttctcgtttgtgccccaagtaatgttgcggtcgaccagctagcagaaaaa
attagtgctactggtttaaaggttgttcgactttgtgcaaagtcaagggaagctgtaagt
tcgcctgttgagcatttgacccttcactaccaggtacgacatcttgacacttctgagaag
agcgagctgcataagctacagcaattgaaagatgaacaaggtgagctgtcaagcagtgat
gaaaagaaatacaaaaatttgaaaagagcaacagaacgcgagataacccagagtgctgat
gtcatttgctctacttgtgttggtgctgcggatcttcggctgtcaaattttagatttaga
caggtccttattgatgagtctactcagtctacagaacctgagtgtcttattcctttggtc
ctcggggtaaaacaggttgttcttgttggtgatcattgtcagcttggccccgtaattatg
tgcaagaaagcagctcgtgctggcttggcacagtctctctttgaacgccttgtgcttctt
ggcattaaaccaattagattgcaggttcaatatcgtatgcatccagcgttgtccgagttt
ccatccaatagcttctatgaaggaacactacagaatggagtcacggttaatgaaaggcta
acaacagggattgatttcccctggcccgtacctaatcggcccatgtttttctatgttcag
ctggggcaagaggagatcagtgctagtggaacatcatacctaaatagaaccgaggctgct
aatgtggagaaacttgtgaccgctttcttaaagagtggagttgtccccagtcagattgga
gtgataactccgtacgagggacagagggcatatattgttaattacatggcaagaaatggt
tctctccgacagcaactttacaaggaaattgaggttgccagtgttgattcttttcaagga
agagaaaaagattacatcatattgtcctgtgtcagaagtaacgagcatcagggcattgga
ttccttaatgatccacggaggctcaatgttgcactcacacgtgctcgttatggaattgtt
attcttggaaacccgaaggttcttagtaaacagcctctgtggaatggcttgctgacacat
tacaaggaacatgagtgtttagttgagggacctcttaataatttaaagcagagcatgata
caatttcaaaaaccaagaaagatgtataatgatcgcagaccattttatggtggtggggct
ggcatgattggaaatgataatcctaatgctgacagaagaggcagccgtggaagggctggt
ggttcttatatgccttctggcccacctagtggttcgagattacacccagctggctaccca
atacccagggtgccattttcaccgtttcctggtggtcctccttctcagccatatgctatt
ccaactcgtggacctgttggtactggtcgtggaagttcagttgggggccaccttccccac
caacaagccacccagcataatgttggaactattggccctaatgtgaacttcccccttgat
agtccaaatagccagccttcacctggtggtccgctatcccaacctggatatggaagccaa
gcattcagggatggttttatgggcggcatttctcaggatttcttaggtgatgatttcaag
agccagggatctcatgttccttacaacatgggcgactattctacacagggaggatatgcg
gttgattatgccacacaaggagcccatggagcttttcctggaaactttatgaaccagaat
tctcaagggggttattctcgtttcagtgggagtaatgatttcatgtcccaggagtatatg
ccgcatggagcacaaggtcttttcacccaagctggctttatcgactcatctcaggatgat
ggacaacagaatccttttggtgtgaacaatcctaatcttcagtctcagggtctcccgaat
tcactctactcgcagcctttctcacactacacccagccactaaacctttcaggcccacag
caatctcaacctcctaaccaaggctcacaaaacccaaaacctcctcacaacggctaa
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