Brassica oleracea (wild cabbage): 106327226
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Entry
106327226 CDS
T04124
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04120
Ubiquitin mediated proteolysis
boe04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106327226
04120 Ubiquitin mediated proteolysis
106327226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106327226
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106327226
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
U-box type E3
106327226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF5770
Motif
Other DBs
NCBI-GeneID:
106327226
NCBI-ProteinID:
XP_013620771
UniProt:
A0A0D3AJ71
LinkDB
All DBs
Position
C2:complement(3659756..3665025)
Genome browser
AA seq
1042 aa
AA seq
DB search
MSTSKPQRSPAEIEDVILRKIFYVTLTDSTTAAAAPDPRVVYLEMTAAEILSEGRDLLLS
RDLMERVLIDRLSGTFPAAEQPFPYLVGCYRRAHDESRKIQSMKDKNLRSEMEIVTREAK
RLAVSYCRIHLANPDMFGSVDDKPIGGVGVGMKKRSVSPLLPLIFSEVGSGSLDMFGGGS
SSGGGAQSPPGFLDEFFKDSDFDNLDVILKELYEDLRSTVINVSVLGDFQPPLRALKYLV
SLPVGAKSLVSHEWWVPRGAYMNGRAMELTSIFGPFFHVSALPDNTLFKSQPDVGQQCFS
QASERRPADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRECVLQFLAEVINANASRG
HIQVDPVSCASSGMFCNLSAVMLRLCEPFLDPHLTKRDKIDPKYVFYGHRLKLSDLTALH
ASSEEVSEWIDKDNTAKATDARNENEIRLSQSKEATSSSSNASGKNAKSTTKYTFISECF
FMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQSPSPQLELDITRMEKELEL
YSQENLCHEAQLLRDGDFIQRALSFYRLVVVWLVGLVGGFKMPLPSTCPMEFSCMPEHFV
EDAMELLIFASRIPKALDGVQLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCWMPRSS
GSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVP
SHRNAWRRIAKEEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKKIEAEMSNTAEWEQRP
AQERQDRTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFL
LQLVGPQRKSLSLKDPEKYEFRPRQLLKQIVRIYVNLARGDSENIFPGAISSDGRSYNEQ
LFNAGADVLRRIGEDGRIIQEFMELGTKAKAAASEAMDAEAALGEIPEEFLDPIQYTLMR
DPVILPSSKTTVDRAIIQRHLLSDNHDPFNRAHLTSDMLIPDVELKARIDEFVRSHQSKK
RASGEDSNKERIQTTSSDMLID
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgagcaagccccagagatcgccggcggaaatcgaggacgtaatcctccgcaag
attttctacgtaaccctaacggactccaccaccgccgccgctgctcccgatcctcgagtc
gtctacttggagatgacggccgcggagattctcagcgaaggcagagacctccttctctcc
cgcgacttgatggagcgagtcctcatcgaccgcctctccggcaccttccccgccgccgaa
cagcctttcccttacctcgtcggctgctaccgccgcgcgcacgacgaatcgaggaagatc
cagtcgatgaaggataagaatctcagatcggagatggagatcgtcaccagagaggcgaag
aggctcgccgtgtcgtactgcaggatccacctggcgaatcccgatatgtttgggagcgtg
gatgataagccaattggtggagtgggagtggggatgaagaagaggagcgtctctcctttg
cttccgttgattttctcagaggttggttctggctcgttggatatgttcggaggtgggagt
agtagcggcggtggcgctcagtctcctcctggttttttggatgagttttttaaggattcg
gattttgataacttggatgtgattctcaaggagttgtatgaggacttgaggtcgacggtt
attaacgtgtctgtgcttggtgatttccagccgccgttgagggcgcttaagtatcttgtt
agcttgcctgttggagctaagtctttggttagtcatgagtggtgggttccacgtggggct
tatatgaacggacgtgctatggagttgacgagcatttttggacctttctttcatgttagt
gcattgcctgataacactctcttcaagagtcaacctgatgttgggcagcagtgtttctct
caagcatcggaacgtcgtcctgcagatttattatcatccttctctacgatcaaaaacttt
atgaacattttgtacagtgggctgcatgatgtactgatgattttacttaaaagtaccgat
acacgtgagtgtgttctgcagtttcttgctgaggtgatcaatgcaaatgcgtcaagaggt
catatacaggttgatccagtttcttgtgctagctcaggcatgttttgtaatctcagtgcg
gttatgctccggctctgtgaaccttttttggacccgcatttaactaaaagagataagatt
gatccaaaatatgtgttctatggacatcgcttgaagttaagcgacttgactgctctccat
gcatcatccgaggaagtgtctgagtggattgacaaggataatacggcaaaagcaactgac
gctagaaacgagaacgaaattcgcttgtcacaatcgaaagaagcgacaagttcaagtagt
aatgcttctgggaaaaatgcaaagtcaacaactaaatacacgttcatttctgaatgcttc
tttatgactgcaagggtcctcaatttgggtctcctaaaagcactctcggactttaaacat
cttgctcaggacatctcgagaggtgaagacaatcttgcaacattaaaagccatgagagac
cagtcaccttctccacagttagaacttgacataaccagaatggaaaaggaattagagctg
tattcccaagaaaatctttgtcatgaggctcaactattaagggatggagattttattcag
cgagccctctctttctatcgattagtggttgtttggttagttggacttgttggtggcttt
aagatgcctttaccatcaacttgccccatggaattctcctgtatgcctgagcattttgtt
gaagatgcaatggagttactgatatttgcttcaagaatccccaaagctttggatggggtg
cagctggacgattttatgaacttcataataatgttcatggcaagtcctgaatatgttaga
aacccgtatctcagagcaaagatggttgaagttctgaactgctggatgcctcgttcaagt
ggttcttctgctacgtcaactctctttgaaggccatcagttatcactcgagtatcttgtc
aggaatttactgaaactatatgttgacattgagttcacgggttctcatactcagttttat
gacaagttcaacattcgccacaacattgccgaacttctagagtatctctggcaagtacct
agtcaccgaaatgcgtggagacggattgcaaaagaggaagagaagggcgtgtacttgaac
ttcttaaacttcttagtcaatgatagcatctatcttctggatgaaagtcttaacaaaatt
cttgagattaaaaaaatcgaggcagagatgtcgaatactgcagagtgggagcagagacca
gcgcaagagagacaggatagaacgagactcttccattctcaggagaacattgttagaatc
gacatgaagctggctaatgaagacgtgactatgcttgcatttacatctgaagagatcaca
gccccttttctactccctgagatggttgagagggttgcgaatatgcttaattacttcttg
ctacaactcgtgggaccacaacgtaagtctttaagcttgaaagatcctgagaagtacgag
ttccgtccacgacagttacttaaacagattgttcgtatatatgttaatctcgcaagagga
gactcggaaaacatattccccggtgccatatccagtgatggacgatcatataacgaacag
ctattcaacgcaggagcagatgtgcttaggagaataggcgaagatggaagaatcattcaa
gagtttatggagttgggaacaaaggccaaagctgctgcttccgaagctatggatgctgaa
gctgcacttggtgaaataccagaagagttcctcgacccaattcagtacacgctaatgaga
gatccagtgatacttccaagctcaaaaaccacagttgatcgagccatcattcaacgtcat
cttcttagcgacaatcacgatccgtttaaccgggcacatttgacatcggatatgttaata
ccggacgtggagttgaaagcgagaatcgatgagtttgtgagatcgcatcagtctaagaaa
cgggcaagtggagaagatagcaacaaggagaggatacagactacaagcagtgatatgtta
atcgattag
DBGET
integrated database retrieval system
