Brassica oleracea (wild cabbage): 106327243
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Entry
106327243 CDS
T04124
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 75
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106327243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
boe03009
]
106327243
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106327243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_2nd
WD40_Prp19
Beta-prop_WDR75_1st
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_IP5PC_F
B-prop_COPA_B_2nd
WD40_MABP1-WDR62_2nd
NBCH_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
106327243
NCBI-ProteinID:
XP_013620802
LinkDB
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Position
C1:3496820..3500574
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AA seq
765 aa
AA seq
DB search
MIRGGRNCITSSPAFSNDAKKLLLCTANSVSIFSVATGLKVASLEGHTAPVTTVIVDPIL
PEDCWTASLDGKIRFWDFSVPSLTLAFDIHLPIYSMVMFTCRPSRSLIAYVSVEEYSSVS
KDLFGQIRRVSLLDEPLLSGDTLKEMEEPKSIVMSPSGEFFGVCHGCKIHIWSTSVGKMA
KGTTLHHTQLITVFAFHPTKRVLAVGDATGRVLIWKDIGDVKLTSVKSEDAAESSCTAFN
WHSDEVTVLNFSSDGASLYSGSKEGALVVWELDTEKKQVLPMMESPLLYFISSSDPTLSS
AICADSXIHILKMPSMEILRTIPGIKPRILDRFGFISYVKTMLISLTRTVSIDPSSGIAA
FSTANHCVQLYNLLSDTEVTEIQVCKRDHQPEDDGVRVAVTAIALSRNGSLMTTAEASFA
EGNLSGGLVSLKFWVFVPDKKTFSISTVINQPHSEAAITAIDLNSRHSMAVSISSAGDFK
TWVCNSDKNLTAEDSNWICHGVGSYKRKQITAATFCPDGSLLALAATTVITIWNPLTTEL
LFVFRKLHTPVLQLSFAGIGFLVAASCCPHAPPHLSVYDLMTLDLSWSYRLSIEAIATKE
RSSYFAVLAWLPDLSVKANEEIFRERCGKDGAILLFDTSCPKPVAIWTVMEASGGSLSFV
EDSEKSQTLLAYVNRSNEYVLFDPYSDETLETSAKDYEVLLEAISKKRKRSRKKTLLAER
PWETKFCGSTLSIPPFRDACSAFFASKMGKKICERVEMHPDSHSL
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcggcggaagaaactgcatcacttcctcccctgccttctcaaacgacgcaaag
aagcttcttttatgcactgccaactccgtctccatcttctccgtcgccactggcttaaag
gttgcttccctggagggtcacacagcaccagtgacgactgtgattgttgaccccatcctc
cccgaagactgctggacggcgtcgctcgatggaaagattcgtttttgggacttctccgtg
ccgagtcttacgctagcatttgatatccaccttcccatttactctatggtgatgtttaca
tgtcgaccgtcacgtagcctgattgcttatgtttcggttgaggagtactcaagtgtctcc
aaagatttgtttggacaaatcaggagagttagtctcttggatgagcctcttcttagtggt
gacactttaaaagagatggaagaaccaaaaagtattgttatgagtccatctggagagttt
ttcggcgtctgtcacggctgcaaaatacatatatggagtacttctgttgggaagatggct
aaggggactacattacatcacacacagttgattactgtttttgcctttcatcccactaag
agagtgttagcagtgggagatgcaacaggaagagtgttgatttggaaggatattggtgat
gtaaaacttacttcagtgaaaagtgaagatgctgctgagtcttcttgcactgcttttaac
tggcattccgatgaagtgaccgtccttaacttctcttcggatggagcatctttgtattct
gggagtaaagaaggggctcttgttgtttgggagctagatacagagaagaagcaagttttg
ccaatgatggagtctcccttgctgtatttcatctcctcttcagatccaactctttcctct
gcgatttgtgcagatagttagattcatattctcaaaatgccttccatggagatattgaga
acgattcctggaatcaaacctcggatattagatcgctttggatttataagctacgtcaag
acgatgcttatctccctcaccagaactgtgtccattgatccctcttccggtatagctgct
ttctccacagcgaatcactgtgttcaactctacaacctcttaagtgacactgaggttaca
gagattcaagtttgcaagagagatcatcaaccagaggatgatggagtccgggttgcagtg
acagcaattgctctctcccggaatggctcactgatgactacagctgaggccagttttgct
gaaggaaacctcagcggaggcttagtttctctcaagttttgggtgtttgtaccagacaag
aaaacattcagcatatccacagtcataaaccaacctcacagtgaagctgctatcacagct
attgaccttaactcgcgccattccatggctgttagtatatcttctgctggggacttcaag
acttgggtttgcaatagtgacaagaatctgacagcagaggattcaaactggatatgtcat
ggagttggctcttataagagaaagcaaataacagctgccactttttgtcctgatggttct
cttctggctcttgcggctacaacagttattaccatctggaacccgttaacgactgaactc
ttgtttgtatttagaaagcttcatacgccagttttgcaactctcattcgctggaataggc
ttccttgttgctgcatcctgttgtcctcatgccccgccgcacttatctgtctatgatttg
atgacgttggatttatcatggtcatatagattatccatagaagctattgccaccaaagag
aggtcatcatactttgcagttttagcatggcttccggatttgtctgtaaaagctaacgaa
gagatctttcgtgaaagatgtgggaaagatggagctatccttttgtttgatacgtcatgc
cctaaaccggtagctatttggactgtaatggaggccagtggaggatcgctttcatttgtg
gaagacagtgaaaagtctcagacgcttcttgcgtatgtaaacaggagcaatgaatatgtt
cttttcgatccttatagcgatgaaactcttgagactagcgccaaggattatgaggttctt
cttgaagcaattagcaagaagaggaagagatcaagaaagaaaacattgctggcggagaga
ccttgggagaccaagttttgcggttcaacgctcagtatcccgcctttcagggacgcttgc
tctgctttctttgcttccaagatggggaaaaagatttgtgagagagtagagatgcatcct
gatagccatagcctctga
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