Brassica oleracea (wild cabbage): 106327341
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Entry
106327341 CDS
T04124
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03008
Ribosome biogenesis in eukaryotes
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106327341
09123 Folding, sorting and degradation
03018 RNA degradation
106327341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106327341
03019 Messenger RNA biogenesis [BR:
boe03019
]
106327341
03009 Ribosome biogenesis [BR:
boe03009
]
106327341
03016 Transfer RNA biogenesis [BR:
boe03016
]
106327341
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106327341
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106327341
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
RNases
106327341
Transfer RNA biogenesis [BR:
boe03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106327341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
SPATA1_C
Motif
Other DBs
NCBI-GeneID:
106327341
NCBI-ProteinID:
XP_013620922
UniProt:
A0A0D3AQT9
LinkDB
All DBs
Position
C2:23778596..23784080
Genome browser
AA seq
1031 aa
AA seq
DB search
MGVPAFYRWLAEKYPLIVSDVVEEEAVEIEGIKIPVDTSKPNPNDLEYDNLYLDMNGIIH
PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
SAKDASDAAAEEEKLREEFEREGRKLPPKINSQVFDSNVITPGTEFMGVLSIALQYYVHL
RLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHMAADCEGKAKKRAGEFDEKGDGVVKKPY
QFLHIWILREYLEFEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKEFRSLDGYLTDGCKPNLKRVEQFIQAIGSFEDKIFQKRTRLHQRQAERIKGD
KARKRRMDDAAPTVQPESLVPVERFSGSRLASAPVPSPFQPSDGVGSAPHQKARRLSSGS
SIGAAIVDVENSLEPDENENKEELKTKLKELIREKSDAFNSDTHEEDKVKLGEPGWRERY
YEEKFSVTTIEEMERIRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDL
GELDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDSNSPIIDFYPTDFEVDMNG
KRYSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELIFSL
DNHCRQLSARERIDLKVQIKPELSDGMNGYLTPCSGATRPPIFRSPMEGMEDILANQVIC
CIYRLPDVHSHINRPPPGVIFPKKIVNIGDLKPPPALWHEDNGRRPMHNNNYNNNNNHYN
NNQGRQNPPGSLSGLHLGDAAHRLVTNSLQTRTDRHGYQAADGHHQQHHHGHGYNQPPYA
PQVPYQYGGYNAPPHGVQDYAPPQSSRQPPYQSRGGYQPRGTSGRFPSDPYPVQSRGGGH
HRNRGGGGYSGGYNQHHQQQQHWDGQGGEEHYNNQRGYGGGQHHRQQGGDRNRRGGGSHH
HHDQGPRHHRY
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttttaccggtggttagcggagaagtatccgttgatagtatcggac
gtcgtcgaggaagaggctgtcgaaatcgagggaatcaagatcccggtggacaccagcaaa
cctaaccctaacgatctcgaatacgataatctctaccttgacatgaacggtatcatccat
ccttgcttccaccctgaagacaggccatctccgactacctttgaggaggtgtttcagtgt
atgtttgactatattgataggctgtttgtgatggtgcggcccaggaagctgctctacatg
gctattgatggtgttgctccaagagctaaaatgaatcaacagcggtctagacggtttaga
tctgctaaagatgcatctgatgctgctgctgaagaagaaaagctgcgagaggagtttgag
agggagggtagaaaactccctcctaaaattaactctcaagtgtttgattccaacgttatt
acacctggaacagagttcatgggtgttctctctatcgctttgcaatattatgtgcatctt
agacttaatcatgatgttggttggaaaaacatcaaggttatcctttcagatgccaacgtt
ccaggtgaaggagagcataaaatcatgtcatacattcgtcttcaaagaaaccttcctggt
tttgaccctaatactcggcattgcttgtatggactggacgctgacctgattatgttaggc
ttggcaactcacgaagttcatttttcaatccttcgagaggtggtattcactcctggacag
caggacaaatgcttcttgtgtggtcaaatgggacatatggctgcagattgtgaaggaaaa
gcaaagaagagggcaggtgaatttgatgagaagggcgatggtgttgtcaaaaagccatat
cagtttcttcatatatggattcttagagagtacctggagtttgaaatgaggattcccaac
ccaccgtttgagattgatctggagcgcattgttgacgatttcatcttcatatgtttcttt
gttggcaacgatttcttgccacatatgccaacactggagattcgagagggtgctatcaac
ttgcttatggctgtttacaagaaggaatttaggtcgctggacggctatctaactgatgga
tgcaagccaaatttaaagagggtggaacagtttattcaggctattggatcattcgaagat
aagatatttcagaaaagaaccaggttacatcagagacaagctgaaagaataaagggagat
aaagctcggaaaagaagaatggatgatgcagctcccacagtccagccagagtctcttgtt
cccgttgaaagatttagtggttctcgacttgcctcggctcctgttccttcaccgtttcag
cctagtgatggagtagggtctgctccacatcagaaagcacgacgtctatcttcagggtcc
agtattggtgctgctattgtcgacgtcgagaacagtcttgaacctgacgaaaacgagaac
aaggaagaactaaagacaaagctcaaggagttaatccgtgagaaatctgatgctttcaac
tcggatactcatgaagaggataaggtgaagcttggggaacctggatggagagaaagatat
tatgaagagaagttctcagttacaaccattgaagagatggaaagaataagaaaggatgtt
gttttgaagtacacagaaggcctttgttgggtcatgcattactacatggaaggtgtttgc
tcctggcagtggttttatccttaccactatgcaccgtttgcttctgatctaaaggatctg
ggagagctggatataaagtttgagttagggactccatttaagcctttcaaccaacttctt
ggggtgttcccagctgccagttcccatgctcttccagagcgctataggaccttgatgact
gattccaactctcccatcattgatttttacccaactgattttgaagttgacatgaacggg
aagcgttattcgtggcagggtattgctaagctgcctttcattgatgaaagacgccttcta
gaggccgtttccgaagtggagttcacattgacggatgaagagaagcgtagaaacagcagg
atgtgcgacatgcttttcatagcaacgtctcatcgccttgctgaactcatcttttctctc
gacaaccattgtcggcaactgagtgccagggagagaatagaccttaaggttcagatcaaa
cctgagctcagtgatggtatgaacggctacttgactccttgttcaggagcgactcgccct
cctatattcaggtccccaatggagggtatggaggacatcttagccaaccaagtcatatgt
tgcatttacagacttccggatgtacatagtcacataaacagacctcctcctggtgtcatc
ttccctaagaagattgtgaacataggtgacttaaaaccaccacctgctctttggcatgag
gacaatggaaggagacctatgcataataataattataataataacaataatcattataat
aataatcaaggaaggcaaaacccacctggaagtttatctgggctgcatctaggagacgca
gcacatcgtcttgtcaccaacagcttacagacgagaacagaccggcatggatatcaagca
gcagatggacatcatcagcagcatcatcatggtcacggctacaatcaaccgccctatgct
ccacaagttccttaccagtatggtggctataatgctcctccacatggcgtccaagactat
gctccgccacagtcatcaagacaacctccgtatcaaagccgaggtgggtaccaacctcgt
ggaaccagtgggagattcccatcggatccttacccggttcagtcacgtggaggaggtcac
caccgtaacagaggtggtggagggtactctggtggctacaaccaacatcatcaacaacaa
caacattgggatggtcaaggtggggaggagcattataataaccaacgagggtatggtggt
ggtcagcatcatcgtcagcaaggtggtgaccgcaaccgtagaggaggtgggagtcatcat
catcatgatcaaggccctagacatcatcgatattaa
DBGET
integrated database retrieval system
