Brassica oleracea (wild cabbage): 106327596
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Entry
106327596 CDS
T04124
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106327596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106327596
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106327596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
106327596
NCBI-ProteinID:
XP_013621230
LinkDB
All DBs
Position
C2:2217252..2221831
Genome browser
AA seq
724 aa
AA seq
DB search
MPRKGLSNFDDYDDGFDDDEDDAYDYDCDVDVEEDEHEADEPKEEEVIAKRGIWRCAICT
YDNDESMHVCDICGVIRHPVPGGNKTISNSTVEGRCKEPMVSKLAKSLFESNSPKRGVLY
QHEHKNLVLAQGALPRISRGNIHDLHKAFSSKNSSLSSIAPFKFDAPSPDDLVSNGLKSS
RTGSKDSMKKKEKQDSAEQNPLKKGADTSSQGRHDNVGGVQTFKSLPKAKADKSKETSSS
SKNMEASESLAGTMNNMSLTGETETSRDVKIRSARSKSNHKPEEWMMLDKESDTLSQLNL
AIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKSQGKGSFAYAWALDESAEERERG
ITMTVAVAYFTSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASIGAFEAGFDNL
KGQTREHARVLRGFGVEQVIVAVNKMDIVGYSKERFELIKQHVGSFLHSCRFKESSLTWI
PLSAMENQNLVAAPSESRLSSWYRGPCLLEAVDSVKSPERDVSKPLLMPICDVVRSSSGQ
VSACGKLEAGAVRPGSKVMVMPSGDQGTVRSLERDSQGCSVARAGDNVAIALQGIDANQV
MAGGVLCHPDYPVSVATRLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDP
KTGEATKKSPRCLTAKQSAMLEVSLQYPVCVETFSESRALGRVFLRSSGRTVAMGRVTRI
IQDS
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaaggattatccaatttcgatgattatgatgacggtttcgatgatgatgaa
gacgatgcttatgattatgactgtgatgttgatgtcgaagaagatgaacacgaagctgat
gaacccaaggaggaggaagtaattgctaagcgagggatttggcgatgtgcgatatgtaca
tatgacaatgatgagagtatgcatgtttgtgatatttgcggtgttattcgtcatcctgtg
cccggtggaaacaaaactatcagtaacagtacagttgaaggcagatgcaaagaaccaatg
gtatccaaattggcaaagtcccttttcgaatcgaattcacccaaaaggggtgtcctttat
cagcatgagcacaagaatcttgtgttggcacagggagctctgcctagaatatcccgtggg
aacattcacgatctccacaaggcttttagttctaaaaattcatcccttagtagtatagca
ccgttcaagtttgatgctccatcgccagatgatttggtctccaatggactaaaatcctcg
agaactggttcaaaagatagcatgaagaagaaagagaagcaagacagtgcagaacagaat
cctttaaagaaaggagcagacacaagctcccaaggtaggcacgataacgttggcggcgtt
caaactttcaaaagtttgccaaaagcaaaagcagataagtctaaggagacgagttcttcg
tcgaaaaacatggaggcgtctgagagtcttgctggcactatgaacaatatgtctttgact
ggggaaacagaaacctccagggatgtaaaaattagaagcgcaaggtcaaaatcaaatcat
aagccggaggagtggatgatgcttgataaagaatcagatacactaagtcaactgaatctt
gccattgtgggacatgttgattctggtaagtcaacactttcgggtaggctactgcatcta
ttgggaagaatatctcaaaaacaaatgcacaagtttgagaaagaagcaaagtcgcagggc
aaaggctcctttgcatacgcctgggcattagacgagagtgccgaagagagggagcgagga
ataacaatgacagtagccgtcgcctacttcacctccaaaagacaccacgtcgtcctcctc
gactctccaggccacaaagacttcgttcccaacatgatagcaggagcaacgcaggcggac
gcagcgatcctcgtcatagacgcatccatcggcgccttcgaagccggtttcgacaacttg
aaaggccagacgagggagcacgcgcgcgttctcagaggcttcggcgtggagcaagtcata
gtcgctgtcaacaagatggacatcgtcggctattccaaggagaggtttgagttgatcaag
cagcacgttgggtcgtttcttcattcctgtcggtttaaagaatcgtctctgacgtggatt
ccgttgagcgccatggagaatcagaacttggttgcggctccctccgaaagccgcttgtcg
tcgtggtaccgaggtccttgtttattggaggcagttgactctgtcaagtctcctgagaga
gacgtctcgaagcctctgctcatgcctatatgcgacgttgtgaggtcgagttcagggcag
gtgtctgcttgcggcaaacttgaagctggagctgttcggccaggctccaaggtaatggtt
atgccgtcgggagatcaaggaaccgtgaggtctctggagcgtgactctcagggatgcagc
gtcgctagagcgggagataacgtggcgatagctttgcaagggatcgatgcgaatcaagtg
atggctggaggtgtgctgtgccatcctgattaccctgtttcagtagcgactcgtttggag
ttgatggtgcttgtcttggaaggagcaacaccgatcttgcttggttctcagttggagttt
catgtgcaccatgcgaaggaggcagcaacggtagtgaagcttgtggcgatgcttgatccc
aaaacaggggaggcgacaaagaagtctcctcgttgtctgactgctaaacagagtgcaatg
cttgaggtgagtcttcagtatccagtttgtgtggagacgttttctgagagtagagctctt
ggaagagtgttccttagatcatcaggaaggactgtcgccatgggcagagttactcggatc
atccaagactcataa
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