Brassica oleracea (wild cabbage): 106327885
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Entry
106327885 CDS
T04124
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03430
Mismatch repair
boe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106327885
03460 Fanconi anemia pathway
106327885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106327885
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
106327885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
106327885
NCBI-ProteinID:
XP_013621638
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All DBs
Position
C2:complement(28941280..28945743)
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AA seq
917 aa
AA seq
DB search
MEGDSSPLIRPINRAVVHRICAGQVILDLSSAIKELVENSLDAGATSIEINLRDYGEDYF
QVIDNGCGISPSNFKVLALKHHTSKLEDFTDLQSLTTFGFRGEALSSLCALGNLTVETRT
KNEQVATLLTFDHSGLLVAEKKSARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVS
LLNAYALIGKGVRFVCSNTTEKTPKSVVLSTQGKGSLKDNIITVFGISTFTSLQPVSICI
SDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPVDMPKVSKLVNELYKDTSSRKYPVAIL
DFVLPGGACDLNVTPDKRKVFFFDEASVMASLKEGLNEIYSSSNASYTVNRLEDNSVRPD
KAGVSSLQEKSNLLSKGIVLAVSSKTRDGKAIEKEISSSREAELDNSSTLKVFKFDIKTR
GTKQGKGSLSVHDESLSVTHLNKTASKGLPDVNVIEKVTDGSKDLNNRASFAQSTLNTFV
TVGKRKHESISTLLSETPVLRNPPPGCRVEKGKFEVRALSARCTMEGDQVGGMAVSKQDV
TPNEVDSEIANLTSPRTHTDNVERHKRQEHEKPLCSEEPTSENTRTEGDTEKILENDSHC
SQPLRPVATVLDSSAHSACPKMFSTLKFSFQNLRKRRLERLSRLQSTCYVSKSLNTPRPK
NYRCFAAATLELSQPDDEERKARALAAATSELERLFRKEDFRRMQVLGQFNLGFIIAKLD
RDLFIVDQHAADEKFNFEHLARSTVMNQQPLLQPLTLELSAEEEVTILMHMDVIRENGFL
LDENPSAPPGRHFRLRAVPYSKKITFGVEDLKDLISTLGDNHGECSVISSYRTSKTDSVC
PSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHLVDLTSL
LTLPDDDNDDGAAISLS
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagattcgtctccgttgataagacccatcaacagagccgtcgttcacagaatc
tgcgcgggacaagtcatcttggacctctcctccgccatcaaggagcttgtggagaacagt
ctcgacgccggagccaccagcatagaaatcaacctccgtgactacggcgaagactacttc
caagtcatcgacaacggctgcggcatttccccatccaatttcaaggttctcgcgcttaag
caccatacttcgaagttggaggatttcacagatcttcagagtttgactacgtttggtttc
agaggagaagctctgagctctctatgtgccttggggaatctcacggtggagacgagaaca
aagaacgagcaagttgctacgctcttgacctttgatcattccggtttgttggttgctgag
aagaagtctgcacgccaaattggtaccactgtcactgtgaggaagttgttctctaattta
cctgttcgaagcaaagagtttaaacgcaatatacgcaaagagtatgggaagcttgtttct
ttattgaatgcatatgcacttattgggaaaggagtgcggtttgtctgctctaacacgact
gagaaaaccccaaagtctgttgttctgagcacacaagggaagggttcactcaaagataat
atcattacagtatttggcatcagcaccttcacaagtctacagcctgtaagtatatgtata
tcagatgactgtagagtcgaagggtttctttccaagcctggacaaggtactggacgcaac
ttggcagatcgacagtatttctttataaatggtcgacctgtagatatgccgaaagtcagc
aagttggtgaatgagctttacaaagatacaagttctcggaaatacccagttgccattctt
gattttgttttacctggtggagcatgtgatttgaatgtcacgcccgataaaagaaaggtc
ttcttttttgacgaggcttctgttatggcttctctgaaggaaggtctgaacgagatatat
tcctctagtaatgcgtcttatacagttaataggctcgaggataattccgtgcgaccagat
aaggctggagtttcatctcttcaggagaaatcaaatctcctttcaaaaggtatcgtgctg
gctgtcagttctaaaaccagagatgggaaagctattgaaaaggaaatatcttcctcgagg
gaggctgagctggataatagttcaacactgaaggttttcaaatttgatattaagacacgt
gggactaagcaagggaaaggttctttatcagtccatgatgagtccctatctgtaactcac
cttaacaagacagctagcaaaggtttgcctgacgtcaatgtgattgagaaagttacggat
ggaagtaaagacttaaacaatcgcgctagctttgcacagtcaactctgaatacttttgtt
actgtgggaaaaagaaaacatgaaagcataagcaccctcctctctgaaacacctgtcctc
agaaacccccctcctggttgtcgtgtggagaaaggcaaatttgaagtccgtgctttgtct
gcaagatgtacgatggaaggtgatcaagttggtggtatggccgtctcgaagcaagatgtg
acgccaaatgaggtggactctgaaatagcaaatttgacatctcctagaacccatactgac
aatgtagaaagacacaaaagacaggagcacgagaaaccattatgttctgaagaaccaaca
tcagaaaacacacgcaccgagggagatacggaaaagattttggagaacgattcacattgc
agtcagccactgcgacctgttgccacagtgctggactcctcagctcattcagcctgtcca
aaaatgttttcaacattaaaatttagtttccaaaacctaaggaagaggaggttagaaagg
ctgtcaagattacagtccacatgttatgtatctaaaagtttgaacacgccaaggcctaaa
aattacaggtgctttgccgctgcaacattagagttatctcaaccggatgatgaggagcga
aaagcaagagctttagctgcagctacttccgagctggaaaggcttttccgaaaagaagat
ttcagaagaatgcaggtactcggacaattcaatcttggttttatcattgcaaaattggat
cgagatctgttcattgtggatcagcatgctgccgatgagaaattcaacttcgaacacttg
gcaagatcaactgtcatgaaccagcaacccttactccagcctttgactttggagctctct
gcagaagaagaagttacaatattaatgcacatggatgtaatcagggagaacgggtttctt
cttgatgagaatccgagtgctcctccaggacgacacttcagactgagagcggttccctat
agcaagaaaatcactttcggggtcgaagatcttaaagacctaatatcaactcttggagat
aaccacggagaatgttcggttataagtagttacagaaccagcaaaacagattcggtttgt
ccatcaagagtccgtgcaatgctagcatcaagagcatgcagatcgtctgtgatgatcgga
gatccactcagaaaaaacgaaatgcagaagatagtagaacacttggcagatctggaatct
ccttggaactgtccgcacggacgaccaacgatgcgtcatcttgtcgatttgacaagtttg
ctcacattacctgacgacgacaatgatgatggtgcagccatttcattgtcatga
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