Brassica oleracea (wild cabbage): 106328194
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Entry
106328194 CDS
T04124
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
boe03016
]
106328194
Enzymes [BR:
boe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
106328194
Transfer RNA biogenesis [BR:
boe03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
106328194
Prokaryotic type
106328194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
106328194
NCBI-ProteinID:
XP_013622038
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All DBs
Position
C3:complement(9144019..9146151)
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AA seq
500 aa
AA seq
DB search
MAAVSFLRYSVPSRVFWYPTRLIRATPTFARFSSSAASTPSEKWESYRKKKVVIRIGYVG
TDYRGLQIQRDDPSLKTIEGELEVAIYKAGGILESNYGDLHKIGWARSSRTDKGVHSLAT
TISLKMEIPETAWKDDPHGTLLAKCISKHLPDNIRVFSVLPSQRRFDPRRECTLRMYSYL
LPVDVIGVKNSFTSDEIDHHLSDFNEILKQFEGDYPFHNYTQRSKYRRKAQQKITQRNGR
PPKKPKSIQASELTEENNRENEEDKVEGVEEVEEEADGEESNEDVADSQAYIRAKWLHEP
DETDKLSAAHFRKVFRCSCGHLESSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELL
PRDIIRLSLNKFTRIVLPLAPSEVLILRGNSFEVPKSPGNFRRRPEIKAMGESEEVERQV
EEFYRGVMVPQVSRFLDSEEAPWKEWLEHLERNDGMIDEQLEEVRRGWEEWKAKPRVMTR
KTEGDKEFGSVSAAVHQAMH
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagtctcgtttctacgatactcagttccttcgcgggtcttctggtacccgacc
cgactcatccgggccacacccactttcgcacgattctcttcctccgccgcctctactccc
tccgagaaatgggaatcgtatcggaagaagaaagtcgtcatccgaattggctacgtgggc
accgattacagaggcctacagattcaaagagacgacccttctctcaaaactattgaaggt
gaacttgaggttgctatatacaaggctggtgggattctagagagtaactatggtgatctt
cacaagattggttgggctagaagtagccgaactgataaaggagttcattctctggcaacc
acaatatcgctgaagatggagatacctgagaccgcgtggaaggatgatcctcacggcact
cttcttgctaaatgcattagcaaacatcttcctgacaatatcagagtcttcagcgtttta
ccatcacaaaggagatttgatccacgaagggagtgtacacttaggatgtactcttacctc
cttcctgttgatgttattggggtcaagaacagctttacttcagatgagattgaccatcac
ctttcagatttcaacgagattttaaaacagttcgagggtgactatcctttccataactat
acacagcggtcaaagtacagaaggaaagcacagcaaaagataacacaaagaaacggacgc
cctccaaagaaaccaaaatcaattcaagcatcagagcttacagaggaaaataacagagaa
aatgaagaagataaagttgaaggagttgaagaagttgaagaggaagcagatggtgaagaa
tctaatgaagatgttgctgattctcaggcctacattcgtgcaaaatggctacatgagcca
gacgaaacggataagctgagtgcagctcatttcagaaaagtgtttcgatgcagttgcgga
cacctggagagttcacttggcttcggctttgttgagatctccatatggggagaatcattc
atgttacatcagatccggaagatgattggaacagctgtggcggtgaagagagagctgctt
ccaagagacatcataagactatctctcaacaagttcacaagaatcgttttgcctcttgct
ccatctgaagtactgatcctaagaggaaacagcttcgaagtgcctaaatcgcctgggaat
ttcaggaggaggccggagataaaagcaatgggggaatcagaagaagtggagagacaagtg
gaggagttttacagaggggtgatggttccacaggtgagtaggttcttggattcggaggaa
gctccgtggaaagagtggcttgagcatttggagaggaacgatggtatgattgatgagcaa
ttggaagaggtgagaagaggttgggaggagtggaaggcaaagccaagggttatgacgagg
aagacagaaggtgataaagagtttggttctgtttcagcagctgttcatcaagctatgcat
tag
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