Brassica oleracea (wild cabbage): 106328851
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Entry
106328851 CDS
T04124
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106328851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106328851
03041 Spliceosome [BR:
boe03041
]
106328851
03036 Chromosome and associated proteins [BR:
boe03036
]
106328851
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106328851
Spliceosome [BR:
boe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106328851
Complex B
106328851
Complex C
U2 SnRNP specific factors
106328851
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106328851
TFTC complex
106328851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
106328851
NCBI-ProteinID:
XP_013623183
UniProt:
A0A0D3AEH8
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All DBs
Position
C1:complement(40344656..40348821)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQQATGITCAINGNFSGGKAQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGGQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMVGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTICYSVCGVDCGFDNPV
FAAVELDYSEADQDPTGQASSEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLVVSAAMHKQKTTFFFLLQ
TEYGDVFKATLDHDGDHVSELKIKYFDTIPVAASICVLKLGFLFAASEFGNHGLYQFQAI
GDEPDVESSSSNLMETEDGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKILNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT
LVLSIGETVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPASLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFAISVRGRSAMLCLSSRPWLGYIH
RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMFDRLGETFNETMVPLRYTP
RKFVVHPKKKLLVIVESDQGAFTAEEREAARKESFQAGGAGENGNGSADQMENGGDDEDK
EDPLCDEQYGYPKAESEKWVSCIRVVDPKTADTTCLLELQDNEAAYSVCTVNFHDKEYGT
LLAVGTVKGMQFWPKKRLVAGFIHIYRFVEEGRKLELLHKTQVEGVPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDCVPRWLTASHHVDFDTMAGADKFGNIYFVRLPQDVSEEIEEDPTGGKIKWEQGKL
NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS
HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDLQRKIADELDRTPA
EILKKLEDARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagcttaaccctccagcaggcgacgggaatcacctgcgcgatcaacggc
aacttctccggcggaaaggcgcaggagatcgccgtcgctcgcggcaagatcctcgatctc
ctccgccccgacgagaacggtaaaatccagacgattcactccgtggaagtcttcggcgcg
attagatccctagctcagtttaggttaaccggcggccagaaggattacatagtcgtaggg
tcggattcgggtaggatagtgatcttagagtacaacaaggagaagaacgttttcgataaa
gttcaccaggagacgttcgggaagtcggggtgtaggaggattgtccctgggcagtacttg
gcggttgatcccaaggggagggctgtgatggttggagcgtgtgagaagcagaagcttgtg
tacgtgttgaatagagatacagctgctaggttgacgatttcgtctcccttggaggctcat
aagtctcatacgatttgttactctgtgtgtggggtggactgtgggtttgataatcctgtg
tttgcagctgttgagcttgattactctgaggcggatcaggatccgactgggcaggcgtct
agtgaggctcagaagcatttgactttctatgagcttgatctcgggctgaaccatgtttcc
aggaagtggtctgagcctgttgataatggtgcgaatatgcttgtgactgttcctggagga
gctgatgggccgagtggggttttggtttgtgctgagaatttcgttatttataagaatcag
ggtcatccggatgtgagggctgtgattcctaggagagctgatttgcctgctgagagaggg
gtgttggtggtttctgctgctatgcacaagcagaagacgactttcttctttcttctccag
accgagtatggcgatgttttcaaggctactttggatcatgatggggatcatgtgtctgag
ttgaagatcaagtattttgacactattcctgtcgctgcgtccatatgtgtgttgaagctg
gggtttcttttcgctgcttcggagtttggtaaccatggtttgtatcagtttcaggcgata
ggggatgagcccgacgtggagtcttcttcctctaatctgatggagactgaagatgggttt
caacctgttttttttcagccgagaagacttaagaaccttgttaggattgaccaagtcgag
agtctgatgccgctcatggacatgaaaatccttaacctctttgaggaagaaacccctcag
atcttctcactctgtggacggggtccccgatcctctctgaggatactgaggcctggttta
gccatcagcgagatggccgtctctcagcttccgggtcagccaagtgcggtgtggacagtg
aagaagaatgtgagtgatgagtttgatgcgtatatcgttgtctccttcaccaatgctacc
ctggttctttcaattggtgaaacagttgaagaagtcaacgacagtgggtttcttgatacc
accccttcccttgccgtgtctctgattggtgatgattcgctcatgcaagtccatcccaat
ggtatccgccacataagggaagatgggcgtattaatgaatggagaactcctggcaagagg
tcgattgtcaaagttggatataaccggcttcaagtggtgattgcgttgagtggtggagag
ctaatttattttgaggcagatatgactggtcagctgatggaggtggagaaacatgaaatg
tctggggatgtggcctgcctggacattgcgcctgttcctgaaggaagacaaagatcccgc
ttccttgctgtgggatcctatgataacacagtgcgtattctgtctctggacccagatgac
tgtctgcagattctcagcgtgcagagtgtctcttccgctccagagtctttgctgttcctc
gaagttcaagcatcaattggtggggatgatggtgctgatcacccggctagcctcttcctt
aactctggtctgcagaacggtgttttgttcagaacggtggttgatatggtgactggtcag
ctttctgattctcgttctcggttcttggggctgaagccacccaagttattcgccatttct
gtgagaggtcggtctgcgatgctgtgtttgtctagtcgaccttggcttggttatatacat
cggggacacttccacttgacgcctctctcttacgagactttggaatttgctgcccctttt
tcatctgatcagtgtgctgaaggtgtcgtctctgttgccggggatgctctcagaattttc
atgtttgatcgtcttggggaaacgttcaacgaaaccatggttcctctgaggtacacgcct
agaaagtttgttgtacatcccaagaagaagctgctagttatcgttgagagtgaccaagga
gcatttaccgcagaagagcgtgaagcggcaagaaaggaaagcttccaggccggtggagca
ggagaaaatggtaatggcagtgcagatcagatggagaatggtggggacgatgaggataag
gaagacccgctctgtgatgagcagtatggttatcccaaagccgagtcagaaaagtgggtc
tcttgcatcagagttgttgaccctaagacagctgatacaacttgtctactggaacttcaa
gacaacgaagctgcttacagtgtctgtacagtgaatttccacgataaagagtatggtact
ttgctagctgttggcacagtcaaagggatgcagttctggcccaagaagagactagtggct
gggttcatacatatttataggtttgtggaggaagggagaaaacttgagctgcttcataag
actcaagtggaaggtgttcctcttgcattatgccagttccagggaagactgctggcagga
atcggacctgtgcttagattgtatgacttggggaaaaagagactgcttaggaaatgtgaa
aacaagctcttcccaaacaccattatctctatccaaacttaccgtgaccgtatctacgtt
ggtgacattcaggagtcattccattactgcaagtacaggcgcgatgagaatcagttatac
atatttgccgatgactgtgtgccgagatggctgacagcatcgcaccatgtggatttcgac
accatggcaggtgcagacaagtttgggaatatctactttgtgaggctgcctcaggatgtg
tcggaggagattgaagaagacccgacaggcgggaagatcaagtgggagcaaggaaagctt
aacggagctccgaacaaagtggacgagattgtgcagttccacgtcggggacgttgtgacg
tgcctccagaaagcttcgatgatcccaggtggatcagaatcaatcatgtatggaacagtg
atgggtagcatcggagcattgcatgcattcacatcccgtgatgatgttgatttcttctct
catctggagatgcacatgaggcaggagtatcctcctctctgtgggagagaccatatggct
tacagatctgcctatttcccagtcaaggatgtgatagatggagatctctgcgagcagttt
ccaacacttccaatagatttgcagaggaaaatagcagatgagttggatagaacacctgct
gagattctcaagaagcttgaagatgctaggaacaagatcatttag
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integrated database retrieval system
