Brassica oleracea (wild cabbage): 106330068
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Entry
106330068 CDS
T04124
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106330068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boe03021
]
106330068
Transcription machinery [BR:
boe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
106330068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
106330068
NCBI-ProteinID:
XP_013624079
LinkDB
All DBs
Position
C3:complement(20037970..20041031)
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AA seq
642 aa
AA seq
DB search
MQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYNRWMMKGGNNDDKEA
GGSSGGGGGGRGRKKSSGGEEEEGNVSDRGEEDEEEEAARKSRLGLNKKGNDDDDEEGPR
GGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPDEREDLLAPEIPAPPEIKQDDEDEEN
GEEEGGLSNSGKELKKLLGKANGLNESEEEEDDDDSDDEEETNFNPVTNSKQKEAAKEEP
VESTPPKPAPPSSSRGTPSAKPSKGKRKLNDGDSKKPSGSSVQKKVKTENETKPSVKEEK
NNSVSKSKAPTKAVKPEPTPATASASASAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKA
RLKTKEAVKFDNGVGISGDDWEHEEIFTDDDEAVGNDPDEREDLLAPEIPAPPEIKQDDE
DEENGEEEGGLSNSGKELKKLLGKANGLNESEEEEDDDDSDDEEETNFNPVTNSKQKEAA
KEEPVESTPPKPAPPSSSRGTPSAKPSKGKRKLNDGDSKKPSGSSVQKKVKTENETKPSV
KEEKNNSVSKSKAPTKAAKAEPTPATASASASASAASGPVTEDEIRAVLMEKKQVTTQDL
VSRFKARLKTKEDKNAFADILRKISKIQKNAGSQNFVVLRGK
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacaaggagttcgtcgccattcctgccggttcttggtataacttcaacaaggtt
gcacagtacaagcaacttacactggaagaagcggaggagaagatgaagaatcgtaggaaa
actgcagatgggtataataggtggatgatgaaaggcggaaataatgatgacaaagaggcg
ggtggaagcagtggaggtggtggtggcggtaggggtcgcaagaaatcttcaggcggcgag
gaagaagagggtaatgtctctgacagaggagaggaagatgaagaggaagaggctgcacgc
aagagtagactcgggcttaataaaaagggcaatgacgacgatgatgaagaaggtccaagg
ggtggtgatcttgacatggatgatgatgacattgagaagggggatgactgggagcatgaa
gagattttcactgatgatgatgaggcagtgggtaatgatcctgacgaacgtgaagatctt
ctggcgcctgaaattcctgctcctccagaaataaagcaggatgatgaggatgaagaaaat
ggagaagaggaaggaggattgagcaattctggtaaagagttgaagaaattgctcggcaag
gctaatggtttgaacgagtctgaggaagaagaggacgatgatgattcagatgatgaggag
gagacaaacttcaatccagttacgaattctaaacagaaggaagcggccaaagaagaacct
gttgagagcactcctccaaagcctgcaccaccttcatcttctcgtggaacgccttctgct
aaaccatcaaagggaaagagaaaactaaatgatggcgactctaaaaaacctagcggcagc
tctgttcaaaagaaagtgaagactgaaaatgagacgaaaccttcagtgaaggaagagaaa
aataactcagtttccaaatccaaggcaccaacaaaggctgtgaaacctgaaccaactcca
gctactgcctcagcttcagcttcagctgctacagggcctgtgaccgaagatgaaatccga
gctgtcctcatggagaagaagcaagtcactacgcaggaccttgtctctaggttcaaggca
agacttaagaccaaagaggctgtaaagtttgataacggtgttggtatctcaggggatgac
tgggagcatgaagagattttcactgatgatgatgaggcagtgggtaatgatcctgacgaa
cgtgaagatcttctggcgcctgaaattcctgctcctccagaaataaagcaggatgatgag
gatgaagaaaatggagaagaggaaggaggattgagcaattctggtaaagagttgaagaaa
ttgctcggcaaggctaatggtttgaacgagtctgaggaagaagaggacgatgatgattca
gatgatgaggaggagacaaacttcaatccagttacgaattctaaacagaaggaagcggcc
aaagaagaacctgttgagagcactcctccaaagcctgcaccaccttcatcttctcgtgga
acgccttctgctaaaccatcaaagggaaagagaaaactaaatgatggcgactctaaaaaa
cctagcggcagctctgttcaaaagaaagtgaagactgaaaatgagacgaaaccttcagtg
aaggaagagaaaaataactcagtttccaaatccaaggcaccaacaaaggctgcgaaagct
gaaccaactccagctactgcctcagcctcagcttcagcttcagctgcttcagggcctgtg
actgaagatgaaatccgagctgtcctcatggagaagaagcaagtcactacgcaggacctt
gtctctaggttcaaggcaagacttaagaccaaagaggataagaacgcttttgccgatatt
ctgaggaagatctcaaagatacagaagaatgccggttctcagaacttcgtcgttttgagg
gggaaatga
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