Brassica oleracea (wild cabbage): 106330948
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Entry
106330948 CDS
T04124
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106330948
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106330948
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Pam16
Motif
Other DBs
NCBI-GeneID:
106330948
NCBI-ProteinID:
XP_013624788
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All DBs
Position
C3:54308672..54312177
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AA seq
682 aa
AA seq
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MSPQTSYSYIKFDLEIWKKKMISQKTIASWMICFLLLLLLPIAFSEPTRNLKGTSARAPT
VQQIRNKEVIVDNGIVRVTFSNPEGLITGIKYNEIGNVLNPYLRARGYWDITWQRENNIL
PTLDRIEGTNFRIITQNEEQVEISFSRTWNGGSDHIPLNVDKRYIIRTNTSGIYTYGIFE
RQPEWPEVEMGLIRVAFKLNPDRFHYMVVADNRQRQMPTDDDRDIHSGRAKPLAYKEAVQ
LTNPHNQMFKNQVDDKYQYSCEVKDNKVHGWISTKSNVGFWLISPSGEYRSGGPVKQELT
SHVGPTTLTTFISQHYVGQDMETRYKTGEAWKKVLGPVFIYLNSDSTGNNLQHSLWEDAK
RQTEQEVEAWPYGFVASSDFPTRQERGTITGRLFVNDRFLAPAGYAYIGLAPPGEAGSWQ
TNTKGYQFWTQTNETGYFTISNVRPGTYNLYGWVHGFIGDFKYQNLVNVAAGSEICLDRV
VFQPPRNGPTLWEIGVPDRTAREYFVPEPYQNTMNPLYLNHTDKFRQYGLWQRYTELYPN
HDLVYTVGVSNYSQDWFYAHVTRNIYGSTYVPTTWQIVFELPYVNWRGSYTLQLALASAA
RANLQVRFNNEYSRPLFSEGIGRDNAIARHGIHGAYHLYSIDVPGRLLRTGTNTIYLRQS
KAVGAFEGLMYDYIRLEEPSIA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaaacatcttattcttacattaaattcgatcttgagatttggaaaaagaag
atgatttcgcagaagacgatagcttcgtggatgatatgtttccttctgttgcttcttctt
ccgatagctttttctgagccgacaagaaacttaaagggaacaagtgcaagagctccaaca
gtgcagcagataagaaacaaagaggtgatagtggacaatggaattgtgagagtgactttc
tcgaatcctgaaggattaataactgggatcaaatacaatgaaatcggcaatgttcttaat
ccatatctccgagctcgagggtactgggacataacatggcaaagagaaaacaacattctc
ccaacgttggatagaatcgaaggaaccaactttagaatcataactcaaaacgaagaacaa
gtggagatttctttctcccgaacatggaatggtggttctgatcatattccattaaacgta
gacaagaggtatattatacgtacaaatacttcaggaatctacacttatggaatttttgag
agacaacccgaatggccagaagtggagatgggtctaattcgagtcgcctttaaactcaac
cctgatagatttcattacatggtggtggcagataatcggcaaagacaaatgccaacagac
gatgaccgtgacatccacagtggccgtgccaagccccttgcttacaaagaggctgtacaa
ttgactaatcctcacaaccaaatgttcaaaaaccaggtggatgataaataccagtactca
tgtgaggtcaaggacaacaaggtgcatggttggatatcgaccaagtccaatgttggtttc
tggcttatctcaccgagcggtgaataccgctctggtggaccggtcaaacaggagctcacg
tctcacgtcggtcccacgacccttacgacctttataagccagcattatgttggtcaggac
atggagacaaggtacaaaactggtgaagcgtggaaaaaggtcttgggacctgtattcatt
tacttaaactctgattctaccggcaataatctacaacattcgttatgggaagatgctaaa
cgacagaccgaacaagaagttgaagcatggccgtacggttttgtagcgtcctctgacttt
cctactcgtcaagaaagaggaaccattaccggtcgactctttgtcaacgacaggttcttg
gctccggcaggatatgcatacatcggtttagcaccgccaggagaagctggttcttggcaa
acaaatactaagggataccaattttggacacagacgaatgaaaccggctatttcaccatt
tctaacgttagaccgggaacgtataatctatacggatgggttcatggttttatcggagac
ttcaaataccaaaacctagttaacgtagctgcaggttcagagatatgtcttgatagagtt
gtgttccagcctcctaggaatggtccaacgttatgggagattggtgtaccggaccgaacc
gccagagaatactttgtaccggaaccataccagaatacaatgaaccccttatacttaaac
cacactgacaagtttaggcagtatgggttatggcaacgttacacggagttatatccaaac
catgatctcgtctacacagttggagttagtaactatagtcaagactggttctacgctcac
gtcacaaggaacatttatggttcgacctatgtaccaacgacatggcagattgtttttgaa
cttccatatgtgaactggcgaggtagctacacattgcaactagctttagcttcggctgca
cgggctaacttacaagtacggttcaacaacgaatactctaggccattgttctctgagggt
atcggaagagataatgctatagcaagacatggaatccatggagcctaccatctttatagc
attgatgtacctggaaggttactaagaaccgggaccaacacaatctatctacgtcagtct
aaagcggtgggagcgtttgaaggtcttatgtatgattacattcgtcttgaagagccttct
atagcttag
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