Brassica oleracea (wild cabbage): 106330973
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Entry
106330973 CDS
T04124
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106330973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106330973
Membrane trafficking [BR:
boe04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106330973
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
Clathrin
TPR_GEMI5
Uteroglobin
GET4
TPR_MalT
CNH
Thiaminase-1_dom
Motif
Other DBs
NCBI-GeneID:
106330973
NCBI-ProteinID:
XP_013624807
LinkDB
All DBs
Position
C3:55223231..55230246
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AA seq
490 aa
AA seq
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MVMASSVSRGGRGFVEVRDFGVPDTVKSISWCGENICLGIRKEYVILNTANGTLSEVFPS
GRVSPPLVTSLPSGELLLGKVNLGVASALRCSTSDREDLLVRGSKSYFRQRGFALLPRRV
EVRLLRSPYPLIQTVLQNIRHLVKSNNAVIVGLDNSVHVLFPVSIGAQIVQLTAAGNFEE
ALALCKSLPPEDSSLRAAKESSIHTRFAHYLFENGSYEEAMEHFLASQVDITHVLSMYPS
IILPKTTMIPEPDKNVDISGDEAALSRGSSGFSDDMESSSPRYLFESEGNAALESKKMSH
NTLMALIKYLQKRRPGMIEKATSEGTEEVISDAVGKSKKSNRGRGVSPLNSGAREMAATL
DTALLQALLHTGQSGAAVDLLKGVNYCDVNICEEILMTSKNYPAQLELFKSNSMHHEALK
LLKQLLEKSKSNQSQTNVTQMFSPELIIEYLKPLCRTDPMLVLEYSMLVLESCPTQTYLE
TSLQTLSIRI
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggtcatggcttcctctgtttctcgaggaggaagagggtttgttgaagtgagagacttt
ggagttcctgatactgtaaagtccatttcttggtgcggtgaaaacatttgcttagggatt
aggaaagagtatgtgatacttaacactgctaatgggacactctctgaggtgtttccttct
ggtagagtttctcctcctcttgtgacttctctaccttctggtgaacttctcttggggaag
gtgaatcttggtgtagcatctgccttgaggtgttctacttcagacagagaggatttgctg
gtcagaggctccaaaagctacttcagacagagaggatttgccttgttgccacggcgagtt
gaggttcgcttgctacgaagcccctatcctttaatacagactgttctccaaaatattcgg
caccttgtcaagagtaacaatgctgtgattgttggtttggataactctgttcatgttctc
tttcctgtttctattggtgcccagattgtacagttaacagctgctggaaactttgaggaa
gccttagctctatgcaagtcactccctcctgaagactcaagcctaagagccgcgaaagag
agttctattcatacaagattcgctcattatctttttgagaacgggagctatgaggaagcc
atggaacacttcctggcatctcaagtagacatcacacatgtactttccatgtacccatcc
attattcttcctaaaacaacaatgattcctgaaccagataagaatgtggacatctctggg
gatgaagctgctctgtctagaggctcatccggcttttcggatgacatggagtcttcctct
cctcgatatttattcgaatctgaaggcaatgcagctcttgaatctaagaaaatgagtcac
aacactctgatggctcttataaagtacttgcagaagaggagacctggtatgatagagaag
gctacttctgaaggaacagaagaggttatttcagatgctgttggcaagtctaagaagtcc
aacaggggacgtggtgtgagtccgcttaactcaggtgccagggagatggcagcaaccctt
gacacagctcttctgcaagcacttctacacactggccagtccggagctgctgtagattta
ttaaagggtgttaactactgtgacgtaaacatctgtgaggagattctcatgacaagtaaa
aattaccctgcacagttggaattgttcaagagcaattcgatgcaccatgaagcccttaaa
cttcttaaacagctcttggaaaagtccaaatcaaaccagtcacaaactaatgttacgcag
atgtttagtcctgagttgatcattgaatatctcaagcctctctgcaggactgatccaatg
cttgtgttggagtactctatgcttgtccttgaaagctgtccaacacaaacttatctggaa
acatctctgcagaccttgtcaattcgtatctga
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