KEGG   Brassica oleracea (wild cabbage): 106330973
Entry
106330973         CDS       T04124                                 
Name
(RefSeq) vam6/Vps39-like protein
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:boe00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    106330973
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:boe04131]
    106330973
Membrane trafficking [BR:boe04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    106330973
SSDB
Motif
Pfam: Vps39_1 Clathrin TPR_GEMI5 Uteroglobin GET4 TPR_MalT CNH Thiaminase-1_dom
Other DBs
NCBI-GeneID: 106330973
NCBI-ProteinID: XP_013624807
LinkDB
Position
C3:55223231..55230246
AA seq 490 aa
MVMASSVSRGGRGFVEVRDFGVPDTVKSISWCGENICLGIRKEYVILNTANGTLSEVFPS
GRVSPPLVTSLPSGELLLGKVNLGVASALRCSTSDREDLLVRGSKSYFRQRGFALLPRRV
EVRLLRSPYPLIQTVLQNIRHLVKSNNAVIVGLDNSVHVLFPVSIGAQIVQLTAAGNFEE
ALALCKSLPPEDSSLRAAKESSIHTRFAHYLFENGSYEEAMEHFLASQVDITHVLSMYPS
IILPKTTMIPEPDKNVDISGDEAALSRGSSGFSDDMESSSPRYLFESEGNAALESKKMSH
NTLMALIKYLQKRRPGMIEKATSEGTEEVISDAVGKSKKSNRGRGVSPLNSGAREMAATL
DTALLQALLHTGQSGAAVDLLKGVNYCDVNICEEILMTSKNYPAQLELFKSNSMHHEALK
LLKQLLEKSKSNQSQTNVTQMFSPELIIEYLKPLCRTDPMLVLEYSMLVLESCPTQTYLE
TSLQTLSIRI
NT seq 1473 nt   +upstreamnt  +downstreamnt
atggtcatggcttcctctgtttctcgaggaggaagagggtttgttgaagtgagagacttt
ggagttcctgatactgtaaagtccatttcttggtgcggtgaaaacatttgcttagggatt
aggaaagagtatgtgatacttaacactgctaatgggacactctctgaggtgtttccttct
ggtagagtttctcctcctcttgtgacttctctaccttctggtgaacttctcttggggaag
gtgaatcttggtgtagcatctgccttgaggtgttctacttcagacagagaggatttgctg
gtcagaggctccaaaagctacttcagacagagaggatttgccttgttgccacggcgagtt
gaggttcgcttgctacgaagcccctatcctttaatacagactgttctccaaaatattcgg
caccttgtcaagagtaacaatgctgtgattgttggtttggataactctgttcatgttctc
tttcctgtttctattggtgcccagattgtacagttaacagctgctggaaactttgaggaa
gccttagctctatgcaagtcactccctcctgaagactcaagcctaagagccgcgaaagag
agttctattcatacaagattcgctcattatctttttgagaacgggagctatgaggaagcc
atggaacacttcctggcatctcaagtagacatcacacatgtactttccatgtacccatcc
attattcttcctaaaacaacaatgattcctgaaccagataagaatgtggacatctctggg
gatgaagctgctctgtctagaggctcatccggcttttcggatgacatggagtcttcctct
cctcgatatttattcgaatctgaaggcaatgcagctcttgaatctaagaaaatgagtcac
aacactctgatggctcttataaagtacttgcagaagaggagacctggtatgatagagaag
gctacttctgaaggaacagaagaggttatttcagatgctgttggcaagtctaagaagtcc
aacaggggacgtggtgtgagtccgcttaactcaggtgccagggagatggcagcaaccctt
gacacagctcttctgcaagcacttctacacactggccagtccggagctgctgtagattta
ttaaagggtgttaactactgtgacgtaaacatctgtgaggagattctcatgacaagtaaa
aattaccctgcacagttggaattgttcaagagcaattcgatgcaccatgaagcccttaaa
cttcttaaacagctcttggaaaagtccaaatcaaaccagtcacaaactaatgttacgcag
atgtttagtcctgagttgatcattgaatatctcaagcctctctgcaggactgatccaatg
cttgtgttggagtactctatgcttgtccttgaaagctgtccaacacaaacttatctggaa
acatctctgcagaccttgtcaattcgtatctga

DBGET integrated database retrieval system