Brassica oleracea (wild cabbage): 106330997
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Entry
106330997 CDS
T04124
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1A
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04120
Ubiquitin mediated proteolysis
boe04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106330997
04120 Ubiquitin mediated proteolysis
106330997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
boe04121
]
106330997
Enzymes [BR:
boe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106330997
Ubiquitin system [BR:
boe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106330997
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-RING_11
DUF913
zf-HC5HC2H
zf_RING_Vps8
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
106330997
NCBI-ProteinID:
XP_013624843
UniProt:
A0A0D3AD78
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Position
C1:complement(37088274..37090824)
Genome browser
AA seq
501 aa
AA seq
DB search
MIRLRTYACVSFIATLSIIHHAFTTRGQFYPAAVYLSTSKISLMLLLNMCLVLMLALWHL
VKLVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLA
QKRVEFIETTPNVSKIAHVRIVSFMAFLLVVDALFMYSSVRHLVRSRQASVSLFFSFEYM
ILATTTVAIFVKYVFFVTDMIMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYG
VPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATTEELTASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENGTSTTAAGQRGLHQGSQQGTSS
SGAQGSETRSSAGGSNDSLSRHHARLQAAASAAAMYGKSMVYPSANTIAWSQPGLEKAST
EAHHHPSSSSSDPTSQLPGENSRAYANIPEAKLENMKNSLETQLEVLRNRLHFLEKRKVE
TTGEADNKGKTVVDASVDGAE
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgatccgattaagaacctacgcatgcgtcagcttcatcgccaccctctcaataatccac
cacgccttcaccacccgcggccaattctaccccgccgccgtctacctctccacctccaag
atcagtctaatgctcctcctcaacatgtgcctcgtcctcatgctcgccctctggcacctc
gtcaagctcgtcttcctcggctccctccgcgaagccgaggtcgagaggctgaacgagcag
gcctggagagagctcatggagattctcttcgccatcacgatcttccgccaggacttctct
agtggtttccttcctttggttgttacgctcttgctgatcaaggccttgcattggctcgct
cagaagagggttgagtttatcgagacgactcctaacgtctctaagatcgctcacgttcgt
attgtttctttcatggcgtttcttcttgttgtggatgctctctttatgtatagctctgtg
aggcatttggttaggtctaggcaggcttcggtttctctcttcttctctttcgagtatatg
attttggcgacgactactgtggcgatttttgtgaagtatgtcttctttgttactgatatg
attatggatggtcagtgggagaagaagccagtttatactttctatcttgagcttatccgt
gacctgcttcacttgtctatgtacatttgcttcttctttgtcattttcatgaactatggt
gtgcctttgcacttgttgagggaactctatgaaaccttcaggaacttccagattcgtgtt
tctgattaccttcgttatcgtaaaatcacttccaatatgaacgacaggttccctgatgcc
actaccgaagaacttactgcaagtgatgccacatgtattatatgccgtgaagaaatgaca
actgccaagaagctgatatgcgggcatctgtttcatgtgcattgtcttcgatcctggttg
gaacgacagcagacatgtcctacttgcagggcacttgttgtacctcctgagaatggcaca
tctactacagctgcaggccaacgaggattacaccaaggttctcaacaaggtacttcaagc
tcaggtgcccagggatctgaaacacgttcttctgctggtggttccaatgatagtttgagc
aggcaccacgccaggcttcaagcagctgcttctgcagccgccatgtacgggaaatcaatg
gtttatccatctgcaaacacgatagcatggtcgcagccgggtctagagaaagcttcaaca
gaagcacatcatcatccttcatcatcatcctctgacccaacatctcagcttcctggtgaa
aactctcgtgcctatgcaaatatcccagaggctaagctggaaaatatgaagaactcttta
gagacccagctcgaggttttgcgaaacagacttcattttctggagaagaggaaagtggaa
accacaggggaagcagataacaaaggaaagacggttgttgatgcttctgtagatggagca
gagtga
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