Brassica oleracea (wild cabbage): 106331530
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Entry
106331530 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 34
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106331530
09122 Translation
03013 Nucleocytoplasmic transport
106331530
03015 mRNA surveillance pathway
106331530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106331530
03041 Spliceosome [BR:
boe03041
]
106331530
03009 Ribosome biogenesis [BR:
boe03009
]
106331530
03012 Translation factors [BR:
boe03012
]
106331530
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106331530
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106331530
mRNA cycle factors
Stress granule specific factors
106331530
Spliceosome [BR:
boe03041
]
Complex C
Other components
EJC/TREX
106331530
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
Helicases
106331530
Translation factors [BR:
boe03012
]
Eukaryotic type
Initiation factors
eIF-4
106331530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Helicase_RecD
AAA_22
CMS1
CbiA
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
106331530
NCBI-ProteinID:
XP_013625363
UniProt:
A0A0D3BMH7
LinkDB
All DBs
Position
C3:complement(62502649..62505090)
Genome browser
AA seq
404 aa
AA seq
DB search
MAAAKGSSDRRSVGGALDDENLVFETTKGIKQIASFDEMGMNDKVLRGVYDYGFKKPSEI
QQRAVMPILKGRDVIAQAQSGTGKTSMIAISVCQIVNTSSRKIQVLVLSPSRELASQTEK
TIQAIGVHTSIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKSVKLL
ILDESDEMLSKGLKDQIYDVYRSLPHDIQVCLISATLPQEILEMTNKFMTDPVRILVKRD
ELTLEGIKQYYVDVGEEEWKFDTLCDLYGRLVINQAIIFCNTRQKVDWLTEKMRSSNFIV
SSMHGDKRQKERDEIMNQFRSFKSRVLIASDVWARGIDVQTVSHVVNYDVPNNPELYIHR
IGRAGRFGREGVAINFVKNSDTKTLRDIERYYGTKIREMPADLA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcgaaaggaagcagcgaccggagaagtgtaggaggagcgttggatgacgag
aatcttgtcttcgaaacgaccaaagggatcaaacaaatagcgagtttcgacgagatgggg
atgaatgataaagttcttcgcggagtctacgactacggtttcaagaaaccttctgagatt
cagcagagagctgtgatgcctatcctcaaaggacgcgacgtcatcgctcaggctcagtcc
ggtacgggcaaaacctccatgattgccatctccgtctgccaaatcgtcaacacttcctcc
agaaagattcaagtgttggtcttgtctccatcaagggaactggcttcacaaacagagaag
acgatacaggccattggagtacacaccagtattcaggcacatgcctgcatcggtggtaag
agcattggagaagacatcaagaagctggagcgtggtgtgcacgctgtgtccgggacgcct
ggtcgagtctacgatatgataaagagagggagtttacaaaccaaatccgtcaagcttttg
atcttggatgaatcagatgaaatgctgagcaaaggtttgaaagaccagatctacgacgtt
tacagatctcttccacacgatattcaggtttgcttgatatctgctactcttcctcaagag
attctggagatgacaaataagtttatgacggaccctgtgaggatacttgtgaagcgtgac
gagttgactcttgaagggattaaacaatattacgttgatgttggggaagaagagtggaag
ttcgatacactttgtgatctttatgggaggcttgttatcaatcaagcaatcatcttctgt
aacacaagacaaaaggtggattggctaactgagaagatgaggagtagtaactttatagtc
tcgtcaatgcatggagacaagcgtcaaaaggagagagacgaaatcatgaaccagttccgg
tcttttaaaagccgtgttttaatcgcatcagatgtatgggcacgagggattgatgttcag
acagtttctcatgtcgtaaactatgatgtaccaaataacccggagctttacatacatcgc
attggacgagctggtcggtttgggagggaaggtgttgcgattaactttgtgaaaaactct
gacacgaagactcttcgtgacattgagaggtactacggtactaaaatccgggagatgcct
gctgatcttgcctaa
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