Brassica oleracea (wild cabbage): 106331581
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Entry
106331581 CDS
T04124
Name
(RefSeq) uncharacterized protein LOC106331581
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106331581
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106331581
Surveillance factors
Other surveillance factors
106331581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
106331581
NCBI-ProteinID:
XP_013625420
LinkDB
All DBs
Position
C3:complement(50962474..50968619)
Genome browser
AA seq
1387 aa
AA seq
DB search
MDVRSPAPVPIGSRRRDNKWSSRWGPDDKEKEKDAKVGYNNKDNKEEVQIETQSVLGSSL
RESDTRDKWRPRHRMEQLQSGGPTSYRAAPGFGLDKGRSEGRSEGPNIGFTVGRGRARGT
WSAFFGAGGFLRNESVPGKPAPTCRYVRGKLLDLYRNQKPDKIPIDMEEVDSVTQVALIE
PLAFITPDVEEEESLKGIWKGRITGSEAHTSPGEESLAEKSLGETKVDGSLLGVVSGDSV
SMHNSNSGLLGSNGGGLWGASESDKVSHGSLEAVRSAFTKSSMLDAGEPLVEQDYTGKLQ
QPDIEVNHSEGTLPPEEFMFSYIDPQGVIQGPFIGSDIISWFEQGFFGTDLESLAEKSLG
ETKVDGSLLGVVSGDSGSMHNSNSGLLGSNGGGLWGASESDKVSHGSLEAVRSAFTKSSM
LDAGEPLVEQDYTGKLQQPDIEVNHSEGTLPPEEFMFSYIDPQGVIQGPFIGSDIISWFE
QGFFGTDLQVRLATAPEGTPFQDLGSVMSYLKTESMQAHINDQISELEETSRKTNSEIGL
SFAPVAESNGSASGHDNVQMKPPHVDDRSFLDYSAQDEEIVFPGRAGVSGYGSAKSSTSM
HDALMGVSGHSAVPVESAKVATQNQNENKLHPFGVLWSELESSSTPVDLLPNRSYDTGHD
QKHLDQGQDLDHLLTLKLQQQQQQQQKIQLQQQQKIQLQQRQLEQEYQLQQKLLQEQQQS
HARNLHFQQILQGQTPDSRIGQSHDFPRFNNVDQMLLEQQLMDELQSSGHRSQNFTPYME
QLAAGNFGQLPHEGHQNELLLEQLLSEQMQSQYRQMRSQHGHMQSEPLRSLEYQLLQQDQ
LMRLANGGRQNTVLEELRHIDPQHGQLQSEPIRSLEYQMMQQEQLMLLANRARHNTLLEE
HRHIDPLWPSNRNDQLLGAHPGIHRSHSSAGFRPVDFHQQQQRPPFEDHFSHLERNLSYQ
QQLNQELFEQGLPFERSTSLPRNTSGLNLDAGRGLNLSELRDAQMQSSGRLGNSTPGFSH
QNPHTQLGEPHFSEMEPRKERWHGADTQLAGGWAETQFHRPNTEADHHKMRSEMRRVGED
SNSWMVDGHTDEKSKQLFMELLHQRPGHQPLESPSMNRGEPYDMMAASGFGFADHGGRQN
ASSSFGSHASSDEHVNGLPGDGNYMGSLQRNNSLLSGSIDGGRKNETKDFSNMLGMSKDA
NDIRTWNNAPPKKEGAGLMSFEAQDRMGKQAVMDSLFQGEVPVATLGRQSSSSISESYSD
NLVGEVRKDRLVVPSHGQVSVLLKRPPSSHSSSSHEGLLEQMSDAANRTAVGNKGSKASF
SEMLKNSSSSSIMKKVAAEPSSDPNEGNKGGGGKKKGKKGRQLDPALLGFKVTSNRLMGE
IHRADDF
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcgatctcctgctcccgttcccatcggatctcggcggcgtgataacaagtgg
tcatctcggtggggtcctgacgataaagagaaagagaaagatgccaaggttggctacaac
aacaaggacaacaaggaggaggttcagattgaaactcaatctgtgcttggcagcagcctc
cgtgagtctgacactcgtgacaaatggaggccacgtcatcggatggagcagctccagtcc
ggtggacctacttcttaccgtgctgcacctgggtttggacttgataaaggacgaagtgaa
ggacgaagtgaggggccaaacatagggttcaccgttggtcgaggaagggcgaggggtact
tggtctgcgttctttggtgctggagggttcttgagaaatgaaagtgttcctggtaaacct
gcccctacgtgtcggtatgtgaggggaaagttgctcgacttgtatagaaaccagaagcct
gataagataccgattgatatggaggaagttgattctgtaactcaagtggctttgattgaa
cctcttgcttttatcacccctgatgttgaagaagaggaaagccttaagggtatatggaag
ggaaggatcactggtagcgaagctcacacttcacctggggaagaatcattagctgagaag
agtctgggtgagacgaaagtggatggttctttgctaggggttgtgagtggtgacagtgtt
tccatgcataatagtaattcaggattacttggtagtaatggtggaggtctatggggtgct
tctgaaagtgataaagtttctcatggaagtcttgaggcagttagatctgcatttactaaa
tcttctatgttggatgcgggtgaaccccttgttgagcaagattatacgggaaagctgcag
caacctgatattgaagtgaatcactccgaagggactctgccacctgaggagtttatgttc
tcgtacattgatcctcaaggagtaatacagggaccgttcattggatctgacattatttca
tggtttgagcaagggttttttgggactgatctagaatcattagctgagaagagtctgggt
gagacgaaagtggatggttctttgctaggggttgtgagtggtgacagtggttccatgcat
aatagtaattcaggattacttggtagtaatggtggaggtctatggggtgcttctgaaagt
gataaagtttctcatggaagtcttgaggcagttagatctgcatttactaaatcttctatg
ttggatgcgggtgaaccccttgttgagcaagattatacgggaaagctgcagcaacctgat
attgaagtgaatcactccgaagggactctgccacctgaggagtttatgttctcgtacatt
gatcctcaaggagtaatacagggaccgttcattggatctgacattatttcatggtttgag
caagggttttttgggactgatctacaggtccgcttggcaactgctccagaagggactcct
tttcaagatctaggcagtgtcatgtcatatttaaagacggagagtatgcaagcccacatc
aatgatcagatcagcgagctagaagagactagtagaaaaacaaattcggagattggttta
tcatttgcacccgtagcagaatctaatggttcagcctctggtcacgataatgttcaaatg
aaaccaccacatgttgatgaccgaagtttcttggactattctgctcaagatgaagaaatc
gtattcccaggaagagctggagtttctggttatggatcggcaaaatcctctacaagtatg
catgatgctttaatgggagtttctggccactctgctgttcctgttgaatcagcgaaagtt
gctactcaaaatcagaatgagaacaagctgcatccgtttggtgtgttgtggtctgagtta
gagagcagcagtacaccagttgatcttttgcctaacaggtcgtatgatacaggacatgac
cagaagcatcttgatcaaggtcaggatttggatcatttattaactctcaaattgcagcag
cagcagcagcagcaacaaaagattcagttgcagcagcagcagaagattcagttgcaacaa
cgtcaactagagcaagagtatcaattacaacagaagctcttacaggagcaacaacagtcc
catgctcggaatttacattttcaacagattcttcaaggacagactcctgattcaaggatt
gggcagtcacatgacttccctcgattcaacaatgttgatcagatgttattagagcagcaa
ctaatggatgaattgcagagttctggccatagatcacaaaattttacaccgtacatggag
cagcttgccgctggaaattttgggcagttaccacatgaaggtcatcaaaacgagctacta
cttgaacagctactttccgaacaaatgcaatctcaatacagacagatgcgttctcaacat
ggacacatgcaatctgaaccgttacggtctttggagtaccagctactgcagcaagaccag
ctcatgcgattggcaaatggagggaggcaaaatacagtattggaggaactgagacatatt
gaccctcaacatggacaattgcagtctgaaccaatacggtctttggagtaccaaatgatg
cagcaagagcagctcatgctattggcaaatagagcgaggcacaatacgttattggaggaa
catagacatattgatcctctatggccatccaaccgtaatgatcagcttctaggagctcat
ccggggatccaccgttcacactcttctgcgggatttagaccagtagacttccatcaacag
cagcagaggccaccctttgaggatcactttagtcatcttgagcggaacctttcatatcag
caacaacttaatcaggaattattcgagcaaggtctaccctttgagcgatctacatcgtta
cccagaaatacatcggggctgaatctggatgcaggaagaggtcttaacctctctgagttg
cgggatgcccagatgcaatcttctggtagattaggaaattctactccgggtttcagtcat
cagaatccccatacacaattaggcgaacctcatttttcagaaatggaaccaaggaaagaa
cgctggcatggagcagatacacagctagctggtggctgggctgaaactcagtttcataga
ccaaatactgaagctgaccatcataaaatgaggtcagaaatgaggagagtgggcgaagat
tccaactcatggatggtagatggacatacagatgaaaagtcaaaacagctatttatggag
ttgcttcaccagaggcctggtcatcaacctctcgagtcaccaagcatgaatcgtggggaa
ccctatgacatgatggctgcttcaggcttcggctttgcagaccatggtggtagacaaaac
gcttcatcttcttttgggtcgcacgcatcttctgatgaacatgtaaacggattaccagga
gatgggaactatatgggatcgttgcagcgtaataattcattgctttctggaagtatcgat
ggtggaagaaaaaatgaaactaaagacttcagtaatatgcttggtatgagcaaagacgcg
aatgacatcagaacgtggaacaatgcaccaccaaaaaaggaaggagcgggattgatgtca
tttgaagcacaagacagaatgggaaagcaagcagtaatggactccttgtttcaaggggag
gttcctgttgctacgcttggcagacagtcttcttccagtatctctgagtcatacagtgac
aacttggttggagaagttagaaaggataggttggtagttccatcacacgggcaggtatca
gttttgttaaaaaggcctccctcatcgcactcgtcatcatcgcatgagggattgctcgag
cagatgtccgatgcagctaacagaacagcagtgggaaacaaagggtcaaaggcgtcgttc
agtgagatgttgaagaatagcagtagcagtagcatcatgaagaaagtggcagcagagcca
tcttctgatccaaacgaaggaaacaaaggcggtggtgggaagaagaaaggcaagaaaggg
aggcagcttgatccagctcttctcggtttcaaagtcactagcaatcgtcttatgggtgaa
attcaccgcgctgatgacttttag
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