Brassica oleracea (wild cabbage): 106332195
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Entry
106332195 CDS
T04124
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106332195
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106332195
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106332195
NCBI-ProteinID:
XP_013626128
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Position
C3:complement(54336212..54341851)
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AA seq
671 aa
AA seq
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MRNGAPVMKMGRVMTQVFVLIFLLQGVHSRTLRSESNNAAVTVNTSGDKQVVVDNGIIQV
TFSNPAGLVTGIKYKGFDNVLNEKIKNRVYWDIVWYEPGQVSQTDFLIGEKFKIISQTSE
QVEISFSKTWDTSRRGSTVPLNVDKRYIIRRGVIGVYMYGVLERLEGWPAVTMDQTRIVY
KLNATKFDYMAVADRRQNLMPLEADRNLTDGSAATLEYKEAVRLVKPQNKLFKGQVDDKY
LYSMEGKDNRLHGWIASEQRVGFWIITASNEFRTCGPVKQELTSHVGPTLLSMFTSTHYA
GKELNTTYASDVPWKKMFGPVFVYLNSAPSHDLMWTDAKRQLAAEVKSWPYDFVKSVDYP
LRQQRGTVKGQLFVMDSFKSKSKLNGEFAFVGLALPGEVGSWQTENKGYQFWTKADKMGM
FTIANVRPGTYNLFAWAAGHIGDYKYEREIIITPGKAINVGSLVYEPPRSGPTLWEIGVP
DRTALEFNIPDPDPALVTKLYANHPNAPEDRFRQYGLWDRYKVLYPREDVTFTVGVSDYK
KDWFFAHLNRRAGEKKLQATTWKIVFNLKQVSQTGNYTLRMALAAANTADILVRVNEPSS
KPMFRTGLVGRDNAIARHGIHGLYRLFNIDVQRKLLKVGDNTIFLTQNRVTSIFTGVMYD
YLRLEGPSGAI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacggagctccggtaatgaagatgggtcgggtcatgactcaggtttttgttctg
atattccttcttcaaggtgttcattcccgaacgttacgaagcgaatcaaataatgccgcg
gttacggttaacacatctggcgataaacaagtggttgttgataatggtataatccaagtc
accttctcgaatccagcgggcttagttactggaatcaagtataaaggctttgacaatgtg
ttgaacgaaaaaatcaagaatcgagtgtattgggatatagtatggtatgaaccaggacaa
gtatcgcagacagattttttaataggagaaaagttcaaaataataagtcaaacaagtgag
caagtcgaaatttcattttctaaaacatgggatacctctcgacgcggctcgacagtccca
ttaaacgtggataaaagatatattattcgacgcggtgtaatcggagtgtatatgtacggt
gtgttagagaggttagaaggttggccggcagtaacaatggaccaaaccagaatcgtctac
aagcttaacgcaacaaagttcgattatatggctgtagcagatcgtcgacagaatctaatg
cctttagaagcagatcgaaatctcaccgatggtagtgccgctacattggaatacaaagaa
gcggttcggttggtaaaaccacaaaataaattatttaaagggcaggttgacgataagtat
ctttactcaatggaaggcaaggacaacagactacatggttggatcgcttctgaacaacgt
gtcggcttctggattattactgccagcaacgagttccgtacttgtgggcccgtcaaacaa
gaactcacttctcatgttggacccaccttactttctatgtttacaagtacacactatgcg
ggaaaagaactcaacacaacttacgcaagcgatgtgccgtggaagaagatgtttggtcct
gtctttgtttatcttaactctgccccctctcatgatctcatgtggaccgatgctaaacga
cagttggctgccgaggttaaaagctggccttatgacttcgtgaagtcagtagattaccct
cttcgccaacaaagaggaacagtcaagggtcaactatttgtcatggacagcttcaaaagc
aagtcgaagttaaacggagagtttgcttttgtgggtttagcattacctggcgaagttggt
tcatggcaaaccgaaaacaagggatatcaattttggacaaaagcagacaaaatggggatg
ttcacaatagcgaatgtgagacctgggacatataacctcttcgcatgggctgccggacat
attggcgactataaatacgagcgtgaaattataattacaccaggtaaggcaataaacgta
ggatccttagtgtatgagccgccaagaagtggtccgacgctgtgggagatcggtgtaccg
gatcggaccgccttagaattcaatatcccagatccggacccagcccttgtgaccaaacta
tatgcaaatcacccaaatgctcctgaagacagatttagacaatatggtctatgggatcgt
tacaaagtattgtatcctcgagaagatgttacttttactgttggagtgagtgactataaa
aaagattggttctttgcacatctcaacaggagagctggagaaaagaaacttcaagcaacg
acatggaaaattgtttttaacttaaaacaagtgtcccaaactggaaattatactcttcga
atggctttggctgcagccaacactgccgatatattagttcgggtcaacgaacctagctcc
aaacctatgtttaggactgggttagtaggtcgggataacgcgatcgctagacatggaatt
catgggttatacagattgttcaatatagacgttcagagaaagttgcttaaggttggtgac
aatacgatttttctcactcaaaaccgggtcactagtatttttacaggtgtcatgtatgat
tatcttcgattggaaggtccttcaggagccatataa
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