Brassica oleracea (wild cabbage): 106332735
Help
Entry
106332735 CDS
T04124
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106332735
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106332735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106332735
NCBI-ProteinID:
XP_013626680
UniProt:
A0A0D3B174
LinkDB
All DBs
Position
C3:3491054..3493268
Genome browser
AA seq
475 aa
AA seq
DB search
MVMASLLKLMLVFCIAGLIPTIQADMSELDEYWSQRADEAREFTLQAYHSDPYEIIDHFH
ERHYDNSTDITPTEEASNAKPEEVENEVIEMVGSGDNSTNSTRRSLRGKGKGKWSKLKGP
CTASNPIDKCWRCRKNWAKRRKKLVKCVRGFGHMTVGGKHGRIYVVTSNLDEDVVNPEPG
TLRHAVIQEEPLWIIFKNDMSIRLNQELMINSFKTIDARGANVHIAHGAGVTMQFVRHVI
IHGLHIHHISESSGGMIRDSADHFGMRTRADGDGLSIYGSSNIWLDHVSMSQCQDGLIDA
IVGSTAITISNSHFTHHNDVMLLGAQNTYDLDKKMQVTVAYNHFGKGLVQRMPRIRWGFV
HVVNNDYTHWELYAIGGSQSPTILSQGNRFIAPPHLPHYREVTKRDYAPEEEWKHWNWRS
EKDIFMNGAYFRQSGNPNYETDHTRRNMIKPKNGYAVSKLTKYAGALDCRVGRRC
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggttatggctagcctgttaaagttgatgttagtgttttgtattgctggtctgattccg
accatacaagccgacatgtctgagttggacgaatattggtcccaaagagccgacgaggcc
cgagagtttactcttcaagcttatcattctgatccttatgaaatcatcgatcactttcac
gaacgtcattacgacaactctactgatattacaccgaccgaggaagctagcaacgctaag
cctgaagaggtggaaaatgaagtcattgaaatggtcggatccggagataactcgacgaac
agcacgagacgaagcttaagaggcaaaggcaaaggaaaatggagtaagctcaagggaccg
tgtaccgcaagtaaccctatagataaatgttggcgttgccgtaagaactgggctaagcgt
cgcaagaagcttgtcaaatgtgtacgtgggttcggacacatgacggtcggtggaaaacat
ggacgcatctacgtggtcacaagcaacctcgacgaggacgtggtgaaccctgaacccggg
acgttgcgtcacgccgtgattcaggaggagcctctctggatcattttcaagaacgatatg
agcattcgtttaaaccaagagcttatgattaatagcttcaagaccatcgatgcgcgagga
gctaatgtccatatcgcgcatggcgcgggggtcacgatgcagtttgttagacatgttatt
atccatgggttgcatattcaccacatatctgagagtagcggtggtatgatccgtgactcg
gcggaccatttcggaatgaggactagagccgatggggacggtttgtctatatacggttcg
tctaacatttggcttgaccatgtctccatgtcgcaatgtcaagatggactcattgatgcc
attgttggatccactgccattacaatctccaactctcacttcactcaccacaacgacgtg
atgttgcttggtgctcaaaacacttatgacttagacaaaaagatgcaagtcacagtggct
tataaccattttggtaaaggacttgtgcagaggatgccaaggatcaggtggggatttgtt
catgttgtgaacaatgactacactcattgggagctgtacgctatcggaggcagtcaaagt
ccgacaattctcagccaaggaaaccgattcattgctcctccacacttacctcattacaga
gaggtgacaaagagagactatgcaccggaagaagagtggaaacactggaactggagatct
gaaaaagatatattcatgaacggagcttattttagacaatctggaaatcctaattacgaa
actgatcacaccagacgaaacatgattaaaccgaaaaatggatacgctgtttcaaagctg
accaaatacgcaggagcacttgattgcagagtcggaagacgctgttag
DBGET
integrated database retrieval system
