Brassica oleracea (wild cabbage): 106333160
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Entry
106333160 CDS
T04124
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106333160
Enzymes [BR:
boe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106333160
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
106333160
NCBI-ProteinID:
XP_013627090
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Position
C3:complement(54342230..54347280)
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AA seq
677 aa
AA seq
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MKNGAIVMKMARVMTQVFVLIFLLQGVHSRTSRNKSNIAKPGQNLASPPVTLKKIGLNQV
VVDNGIIQVTFSNPSGLITGIKYNGFNNVLNDEIEDRGYWDVVWYEPEKNPQTDFLKGEK
IDIINQTSEHVEISFSRTWTMARRGSIAPLNVDKRYIIRRGVSGVYMYAVLERLKGWPQV
EMDQTRIVFKLDTTKFDFMAISDNRQKVMPSDADRNINNGIAAPLAYKEAVRLMNPQNHT
LKGQVDDKYMYSMESKDNKVHGWISSDQRVGFWMITPSDEFRACGPVKQDLTSHVGPTVL
SMFTSVHYVGKEMNTAYASSEPWKKMFGPVFVYLNSPSSSDLLWTDAKRQMAAEVQSWPY
DFVKSVDYPLHHQRGTVEGQLFVTDSYKSKSKLYGEFAFVGLALPGQAGSWQTENKGYQF
WTRADKMGRFAIANVRPGSYSLYAWVIGFIGDYKYERDIIITPGKEINVGPIVYEPPRNG
PTLWEIGVPDRTAAEFNIPDPDPTLLTKLYLSNANPSQDRFRQYGLWNRYSVLYPRKDLV
FTAGVSDYKKDWFYAHVNRYSGKEKYQATTWKIVFNLKTMIKTGNYTLRMALAAATNADL
FVRVNEANSNPIFTSGLIGRDNAIARHGIHGLYRLYSIDVQRKLLRVGDNTFFLTQNRNT
SLFTGVMYDYLRLEGPY
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacggagctattgtaatgaagatggctcgagtcatgactcaggttttcgttctg
atatttcttcttcaaggtgttcattcccgaacgtcacgaaacaaatcgaatatcgctaaa
ccgggacaaaacctcgcatctcccccggttacgcttaagaaaattggccttaaccaagtt
gtcgttgataatggtatcatccaagtcaccttctcgaatccatcaggcttaataactgga
atcaagtataatggttttaacaatgtgttgaacgatgaaatcgaggatcgcgggtattgg
gatgtagtatggtatgaaccagaaaaaaacccgcaaacagattttttgaaaggagaaaaa
atcgatattataaatcaaacaagtgagcatgtcgaaatttcattttcaagaacatggact
atggctcgacgtggctcgatagccccattaaacgttgataaaagatatattattcgacgc
ggtgtatctggagtgtatatgtacgctgtgttagagaggttaaaaggctggccgcaagtg
gagatggaccaaactagaattgtcttcaagcttgacacaacaaaattcgattttatggct
atatcagataatcggcagaaagttatgccttctgatgcagatcgaaatatcaacaatggc
attgccgctccattggcttacaaagaagcggttcggttgatgaatccacaaaatcatacg
cttaaagggcaggttgacgataagtatatgtactcgatggaaagcaaggacaacaaagta
catggttggatctcttctgaccaacgtgtcggcttctggatgattactcctagcgatgag
ttccgtgcttgtgggcccgtcaaacaagatctcacttctcatgttggacccaccgtactt
tctatgtttacaagtgtacattacgtgggaaaagaaatgaatacagcttatgcaagcagt
gagccgtggaagaaaatgttcggtcctgtttttgtttatctcaattctccctcctctagt
gatctcctttggacggatgctaaacgacagatggctgccgaggttcaaagctggccttat
gacttcgtgaagtcagttgattaccctcttcaccaccaaagaggaacagtcgagggtcaa
ctatttgtcacggacagttacaaaagcaagtcgaagttatacggggagtttgcttttgtg
ggtttagcactacctggtcaagctggttcatggcaaaccgaaaacaagggatatcaattt
tggacacgagcagacaaaatggggaggttcgcaatagcgaatgtgagaccaggaagttat
agcctctacgcatgggttatcggatttattggagactataaatacgagcgcgacattatc
atcacaccaggcaaggagataaacgtaggaccaatagtgtacgagccgccaagaaatggt
ccgacgctgtgggaaatcggggtaccggatcggaccgcagcagaattcaatattccagat
ccggatccaacccttttgaccaaactctatcttagtaacgcaaatccttctcaagacaga
tttagacagtatggtctatggaatcgttacagtgttttgtatcctcgaaaagatcttgtt
tttactgctggagtaagtgactataaaaaagattggttctatgcacatgtcaacagatat
tctggaaaagagaaatatcaagcaacgacatggaaaatagtgttcaatttaaaaacaatg
attaaaacaggaaattacacacttcgaatggctttggctgcagccacgaatgcggattta
tttgttcgggttaacgaagctaattccaatcctattttcacgagcgggttaataggtcgg
gataacgcgatcgctaggcatggaattcatggtctatacagattgtacagtatcgatgtt
caaagaaagttgcttagggttggtgataatacattttttcttactcaaaatcggaatact
agtttgtttacaggtgttatgtacgactatcttcgtttggaaggtccatattaa
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