Brassica oleracea (wild cabbage): 106334557
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Entry
106334557 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106334557
09122 Translation
03013 Nucleocytoplasmic transport
106334557
03015 mRNA surveillance pathway
106334557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106334557
03041 Spliceosome [BR:
boe03041
]
106334557
03009 Ribosome biogenesis [BR:
boe03009
]
106334557
03012 Translation factors [BR:
boe03012
]
106334557
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106334557
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106334557
mRNA cycle factors
Stress granule specific factors
106334557
Spliceosome [BR:
boe03041
]
Complex C
Other components
EJC/TREX
106334557
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
Helicases
106334557
Translation factors [BR:
boe03012
]
Eukaryotic type
Initiation factors
eIF-4
106334557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
Utp25_C
NAT10_TcmA_helicase
AAA_22
Flavi_DEAD
DUF1198
Motif
Other DBs
NCBI-GeneID:
106334557
NCBI-ProteinID:
XP_013628310
LinkDB
All DBs
Position
C3:28408238..28415355
Genome browser
AA seq
408 aa
AA seq
DB search
MAEANPSRGGGRRGGGPMDDDKLVFETTEGIEPITNFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELASQTE
KTIQAIGLHANIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRKSLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRTNNFT
VSSMHGDMPQKERDEIMNQFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaatcctagccgcggaggcggaaggagaggtggcggaccgatggatgac
gacaagttagtcttcgagacgaccgaagggatcgagcccatcaccaatttcaacgatatg
ggcatcaaggaagacgtgcttcgcggcgtctacgagtacggcttcgagaaaccatccgcg
attcagcagagagcggtcatgccgattctccaagggcgagatgtcatcgctcaagctcag
tccggtacggggaaaacctccatgattgctctctccgtctgccaaatcgttgacacttcg
tctagagaagttcaggcattgatattgtccccaacaagagagctggcttcacaaacagag
aagactattcaagccattggattacacgcaaacattcaggcgcatgcctgcatcggtggg
aagagcgttggagaagacatcaggaagctggagaatggtgtccatgttgtctctgggaca
cctggtcgtgtctgtgatatgattaagaggaaaagtctacgcaccagagctattaagctt
ctgattcttgatgagtcagatgaaatgcttagcagagggttcaaggaccaaatctatgat
gtttacagatatcttccacctgatcttcaggtttgcttggtttctgcaactcttcctcac
gagattttggagatgacctccaagtttatgacggaaccggtgaagatacttgtgaagcgt
gatgagttgactcttgaaggcattaaacaatttttcgttgctgttgagaaagaggagtgg
aaatttgatacgctttgtgatctttatgacactcttactatcactcaagctgttatcttc
tgcaacacaaaacgaaaggtggattggctaagtgagaaaatgaggactaacaacttcaca
gtctcatcaatgcacggtgacatgcctcagaaggaaagagacgagatcatgaatcagttt
cggtcaggcgacagccgtgttttgatcacgacagatgtatgggcacgtgggattgatgtg
cagcaagtttcccttgtgatcaattatgatctccccaacaaccgggagctctacatccat
cgtattggacgatctggtcgtttcgggcgtaagggtgttgcgatcaactttgttaaaagc
gacgacataaagatcctccgggacattgagcagtactacagtactcagattgacgagatg
ccaatgaatgtagctgatcttatctaa
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