Brassica oleracea (wild cabbage): 106335062
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Entry
106335062 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106335062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106335062
03009 Ribosome biogenesis [BR:
boe03009
]
106335062
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106335062
Spliceosome [BR:
boe03041
]
Complex A
U1 snRNP components
U1 related factors
106335062
Complex B
106335062
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
Helicases
106335062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106335062
NCBI-ProteinID:
XP_013628934
LinkDB
All DBs
Position
C3:complement(23045552..23051483)
Genome browser
AA seq
1053 aa
AA seq
DB search
MATAEAAPASAGPRYAPEDPTLPKPWKGLIDGSSGVLYYWNPETNVTQYERPSPPLPAGA
PPKLAQIPVPSAGQQGHQTQLELGKPVGHVPQQHGLQQQPQQFPSQHGRPQMMQQQQHPV
QQMPQQSGQQFSQQQGQSMAPQPHGHPSQQTYQPTPQQQQQHSQMPQQLSHQYPHSQQQY
MGYRPYMQPQGNQNSHQMGPQGQQFPSQQEYNSMPPKREGEEFHRGEKTGFSQPHLQNSE
ASPSQNTAFEAKASSQRPNATQQYNGPQGNFQHPAAVTQFQQPGANLAHQQLGPRPPHHM
DQMLHQKSHASPFRSNNTYENNLQARPGNDSYGNTRMEGPMRGAQPRHPAAMPEDIRIGG
GPPAHADPAMGQTGHGPYGHAGPAFPTAGRPHFATTPDGPHLSPVDSYRKQHEITVTGEN
IPAPFITFESSGLPPELLRELLSAGFPSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGY
LIPAFTLLRHCRNDPRNGPTVLILAPTRELATQIQNEALRFGRSSRISCTCLYGGAPKGP
QLQELERGADIVVATPGRLNDILEMRKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEI
PPRRQTLMYTATWPNEVRKIANDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKEGR
LEQILRSQERGSKVIIFCATKRLCDHLSRSVGRNFGAVVIHGDKSQGERDWVLNQFRSGK
SCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWK
YAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGFNQDRRGMVNRFDSGRGGSRWDSAGE
FGGRGGGFGGRGGGFGGRSGGFGMRDDSFGRGRGFPGHDAGRMNVGRGGFGRFGNNNMDG
RGFGRGGGGGGGGGSGRGFGRGGGRFDNRRGRSRSRSPDLVRPRRSPSYSRSRSRSYSRS
RSRSWSRSRSRSPRRSGHKRSRSYSRSPSPVYERRDRRPRVSGFDIKPPAESVVNPDTVG
TAASETVAPAPLSGRQWNGVVESEVEAALVDKP
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccacggcggaagcagctccggcttctgctggtccacgatacgctccggaggatccc
actcttcccaaaccatggaaggggcttatcgatggaagcagcggcgttctgtattactgg
aatcctgaaacgaacgttactcaatacgaaagaccttctccacctttgccagctggagcg
cctcctaagctagctcagattcctgtaccttctgcaggacaacaaggccatcaaactcag
cttgagctaggaaagcccgttgggcatgtgcctcagcaacatggtttacagcaacagcct
cagcagttcccatctcaacatggaaggccccaaatgatgcagcagcagcagcatccggtc
cagcagatgcctcaacagtcaggtcagcaattttcccaacaacagggccaatctatggcg
ccgcagccacatgggcatccttctcaacagacgtatcagccaacaccacagcagcagcag
cagcattcacagatgccccagcagctgagccatcagtatccacattcacaacaacagtac
atgggttatcgtccttacatgcaaccacaagggaatcaaaattcacatcagatgggtccc
cagggtcagcagtttccgagccagcaagagtacaactcaatgcctccaaagagggagggg
gaggagttccataggggtgagaaaactgggttttcgcaaccccatttacaaaattctgaa
gcttcgccatctcaaaataccgcctttgaggctaaggcatcatcacaaagaccaaatgca
actcagcaatacaatggacctcaaggaaactttcaacaccctgctgcagtcacccagttt
caacagccaggggctaatctggctcaccagcagcttggacctaggcctccacatcacatg
gaccaaatgttgcaccagaagtctcatgcttcccctttccgatctaataacacgtatgag
aataatctacaagctagacctggtaatgactcctacggtaacacaagaatggaagggcca
atgagaggtgcacaaccacgccatcctgcagcaatgcctgaggatataaggataggtggc
ggtccacctgcacatgctgatccggccatggggcagacagggcatggaccatacggacac
gctggtccagcttttccaaccgcaggaaggcctcattttgcaacaactcctgatggtccc
catctttcgcctgttgatagttaccgaaaacagcatgaaatcacagtaactggtgaaaac
attccagcaccattcatcacgtttgaatctagtggtctcccacccgaattacttagagag
ttgctttctgctggatttccatcaccaacaccgatccaggctcaaacatggccaattgct
ctgcagaacagggatatagttgcaattgcaaaaactggttctggtaaaacattgggatac
ttgatccctgccttcactcttcttaggcactgtcgtaatgacccccgcaatggccccacg
gttttgatcttagctcctactcgggagctagctacacagatacaaaatgaagcccttagg
tttggccggtcttccagaatatcttgcacttgcttgtatggtggagctccaaagggtcct
caattgcaagagttggaacgaggagctgatattgtggtggcaactcctgggcgcctaaat
gacatactggagatgaggaagattgatttccaacaagtttccctccttgtgcttgacgaa
gcagatcgaatgcttgacatgggttttgaaccccaaatccgtaagattgtgaatgaaata
cctccgcggagacagactcttatgtacactgcgacttggccaaatgaagttaggaaaatt
gcaaacgatcttcttgtgaaccctgtccaagttaacataggcagcgtagatgagttggct
gcaaacaaggcgataacgcagtatgttgaagttgtcccgcaaatggagaaagaggggcgt
ttggagcaaatccttaggtcgcaagaacgaggttcaaaagttataatattctgtgccacg
aaaaggctttgtgaccatctttcacgcagcgtcggacgtaattttggtgctgttgtaatc
catggagacaaatctcaaggtgagagagactgggtacttaaccagttccgcagcgggaag
tcgtgtgtgttgatagctactgacgttgctgcccgggggctcgatataaaagacatcaga
gttgtgatcaactacgattttccaaccggtgttgaagactatgtccaccgtatcgggaga
actggtcgagctggtgcaactggagttgcattcactttctttacagagcaagattggaaa
tacgcgcctgatttaatcaaagtcctggaaggagcaaaccagcaagttccgcctcaagtg
agggacattgcaatgcgcggtggcggtggtggtggtccgggttttaatcaggaccgaaga
ggcatggtaaaccgttttgactctggccgtggtggtagccgttgggattctgcaggtgag
tttggtggacgtggcggtgggtttggtggacgtggcggtgggtttggtggccgaagtggc
ggatttggaatgagagatgattcattcggacgtggtcggggttttcctggtcatgatgcg
ggtcgtatgaatgtgggtagaggcggatttggtcggtttggtaataataatatggatggt
cgaggctttggtcgtggtggtggtggtggtggtggtggtggtagtggtagaggctttggt
cgtggtggtggacggtttgataacagaagagggagaagccgtagcagaagtcctgatttg
gttaggccacgtcgtagcccgagctatagcaggagccgcagtcgtagctacagtcgtagc
cggagcaggagctggtcacgctcaaggagtcgtagccctaggcgtagtggtcataaacgg
agcagaagctatagccgtagtcctagtccagtgtatgaaagaagggataggcgaccgcgt
gtttctgggtttgatattaaaccaccagctgagtctgtcgtgaatccagacactgtagga
actgctgcttctgaaaccgtggcccctgctccattgtctgggagacaatggaatggtgtt
gtcgagtctgaggtagaagcagctttagttgataaaccctaa
DBGET
integrated database retrieval system
