KEGG   Brassica oleracea (wild cabbage): 106335107
Entry
106335107         CDS       T04124                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106335107
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:boe03041]
    106335107
   03036 Chromosome and associated proteins [BR:boe03036]
    106335107
Spliceosome [BR:boe03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    106335107
 Complex B
    106335107
 Complex C
   U2 SnRNP specific factors
    106335107
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    106335107
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_2 HEAT_EF3_N Htt_N-HEAT_1 XMAP215_CLASP_TOG Adaptin_N
Other DBs
NCBI-GeneID: 106335107
NCBI-ProteinID: XP_013628988
LinkDB
Position
C3:complement(36392433..36396430)
AA seq 1215 aa
MANIDPEIAKTQEERRKLEAEREGVSLTFVTLDRDLYGGNERDSYSTSIAPNDEEDPNLD
THGSLVAQRLASFTAPKSILNEVARLHSEDDDDDGGFKPRQTIAEREGEYRNRRLNRVLS
PDRVDPFAMGEKTPDPSVRTYNDHMRETAVQREREETLRLIAKKKKLAEEAAKKQKDSAH
SKKRNRWEQDGGAETSSKKAKASDSVWDATPGRVSVGRRNRWDEPTPGRVTDSDATPSGV
TWDSTPKGYATPTPKRQRSRWDETPATMGSATYTPGFTPFQINLLGAMTPDQYNQARWEK
EIEERNKPMSDEELDAMFPKGYKVLNQPASYVPIRSPARKVIGTPTPMTTPGYIIPEENR
GQQYDVPPELPGGLPFMKPEDYQYFGALLNEEKEEELSPDEQKERKIMALLLKVKNGTPA
QRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPY
VHKILVVIEPLLIDDDYYARAEGREIISNLSKAAGLATMIAAMRPDIDNADEYVRNTTAR
AFAVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLNSLVELI
EHGLSDENLKVRTITSLSLAALAEASAPYGIESFDSVLIPLWKGIRSHRGKVLAAFLKAI
GFIIPLMDAGYARYFTKEVMVILIREFQSPDEEMRNIVLKVVKQCASTEGVEADYIRSDV
LPEFFKHLWVKRMALDKRNYKSLVETTVEIANKVGVADIVERLVNGLKDESELYRRMVME
AIDKVVTNLGASDIVARSEELLIDGILYAFQEQTNDDANVMLNGFGAVVNGLGQRVKPYL
PQICGTIKWRLTYKSANVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEV
LGSVLGASKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEF
VPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLRVQERQNR
VCTTVAIAIVAETCSPFTVLPALVNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAV
TPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNLIWPNIFETSPHVINA
VMEAIEGMRVALGGAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVASYPVFEN
EQTNIYSRPELTMSL
NT seq 3648 nt   +upstreamnt  +downstreamnt
atggcgaatatagaccccgagatcgccaaaactcaagaagagagacggaagttagaagca
gaacgcgagggagtttccctcacgtttgtgactctcgatcgtgatctctacggaggcaac
gaacgtgattcctactcgacttccatcgcaccaaacgacgaggaggatcccaatctcgac
acccacgggtcgcttgtggctcagcgtctcgcctccttcaccgctcccaagtctatcctc
aacgaggtggctcgtcttcacagcgaagatgatgatgacgacggtggattcaagccgaga
cagactatcgcggagcgcgagggtgagtaccggaacaggagacttaatcgggttctctct
ccggatagagttgatccgtttgctatgggagagaagacgcctgatccgagtgttagaact
tataatgatcatatgagggagacggctgtgcagagggagagggaggaaaccttgaggctt
attgctaagaagaagaagcttgcggaagaagctgccaagaaacagaaagattctgctcat
tccaagaagaggaacaggtgggagcaagacggtggtgctgaaacctcttcaaagaaagct
aaagcatcagattctgtttgggatgcaactccagggagagtttctgttggaagaaggaac
agatgggatgagcccacacctggtcgtgtgactgattccgatgcaactccttcaggtgtt
acttgggactcgactcccaaaggttatgcaactccaaccccgaagcgtcagcgttctagg
tgggacgagacaccagccactatggggagtgctacttacacccctggtttcactccattt
cagattaatctgcttggtgctatgacaccggatcagtacaatcaggcgaggtgggagaag
gaaattgaagagagaaacaagccaatgagtgatgaagagcttgacgccatgtttcctaaa
ggatacaaggttttgaaccagcctgcttcttatgttcccattcgatcccctgctaggaag
gttataggaaccccgacacccatgacaactcctggctacattattcccgaggaaaaccgc
gggcagcagtacgatgttcccccggaacttcccggtgggctgccgtttatgaaaccagag
gattatcagtatttcggagcgctcttgaatgaagagaaggaagaagaactgtctcctgat
gagcagaaagaacgcaagataatggcactgttgctgaaggtgaaaaacggaacgcctgca
cagaggaaaacagctttgaggcagcttactgataaggcccgtgagtttggcgctggtcct
ttgtttaataaaatcttgcccttgctcatgcaacccactttggaagatcaagagaggcat
cttttggtgaaagtgattgataggattctgtacaaacttgatgagcttgtacggccctac
gtccacaagattctcgttgttattgagcctttgttgatcgatgacgattattatgcccgt
gcagaagggagagaaattatctctaaccttagcaaagcagctggtttagccaccatgatt
gcagctatgcgtccggatattgataacgctgatgaatacgtgaggaacacaacagcgaga
gctttcgctgtggtcgcttcggcgcttggaatccctgcactattgccgttcctgaaagct
gtttgccagagtaagaagtcatggcaggcacgacacactggaatcaagattgtgcagcag
attgccatactaattggctgtgccgttttgcctcacttgaattctctagtagaacttatc
gaacacggtctcagtgatgaaaacctgaaggttaggactattacgtccttgtcactggct
gctctcgccgaggcttctgctccttatggtattgagagcttcgactctgttcttatacct
ctgtggaaaggtattaggtctcaccgtggcaaagtcttggctgcgttcttgaaggcgatt
ggttttatcatccctttgatggatgctgggtatgcgagatactttacaaaagaagtgatg
gtgatcttgattagggagttccagtcgcctgatgaagagatgaggaatattgtactcaag
gtggtgaaacagtgtgcaagtaccgaaggtgttgaagcggattacatccgcagcgatgtt
ctgcctgagtttttcaaacatttgtgggttaagagaatggctctggataaaagaaactat
aagtcgcttgttgaaactactgttgagattgcgaacaaggttggtgttgcggatatcgtg
gaaagattggttaacggacttaaagatgagagtgaattgtaccggcgtatggttatggaa
gccattgacaaggttgtcacaaacttgggagcatcggatattgttgcgagatcggaggag
ctgctcatagatggcattctttatgctttccaagaacagacaaacgacgatgctaatgtg
atgcttaatgggttcggtgctgtagtgaatggacttggtcagcgagtaaagccttacctt
cctcagatctgtggcaccatcaagtggaggttaacctacaagagtgcaaacgtaagacag
caagccgctgatctcatctctagaatcgctgttgttatgaagcagtgcggagaggaacag
ttgatgggacatctcggtgttgtcctgtacgagtatcttggagaagagtaccctgaagtc
ttgggatcagttcttggagcttcaaaagctatcgtcaacgtgattggtatgacaaagatg
acgcctcccattaaggatctgcttccaagactgactccgattttgaagaaccgacacgag
aaagtgcaagagaattgtatcgatcttgttggtaggattgctgatcgtggtgctgagttt
gttccagcaagagaatggatgagaatctgtttcgagcttcttgaaatgctcaaagctcat
aagaaaggtattcgccgtgcaactgtcaacactttcgggtacatcgccaaagccattgga
ccacaagacgtgctagccacgttactgaacaatctcagagtccaagaacgccagaaccgt
gtttgcaccacagtcgcaatcgccatagtcgctgaaacatgctctccgtttaccgtctta
cccgctttggtgaacgagtaccgagtcccagagctcaacgtccaaaacggtgtcctgaaa
tccctctctttcctcttcgagtacattggagaaatggggaaggattacatatacgcagtc
acgccgttgctcgaagacgcgctcatggacagagatttggttcacagacaaaccgcggct
tcagctgttaaacacatggctctaggtgtagctgggttgggttgtgaagacgctttggtt
cacttgcttaacttgatctggcccaacattttcgagacatctcctcacgtcatcaacgct
gtgatggaagccattgaaggaatgagggttgcgttaggtggagcagttatactgaactat
tgtctgcagggtttgtttcacccggctcgcaaagtccgtgaagtgtactggaagatatac
aattcgctttacattggtgctcaggacacgcttgttgcttcttacccggtctttgagaat
gagcagaccaatatttatagccgacccgagctaactatgtccctctga

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