Brassica oleracea (wild cabbage): 106335122
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Entry
106335122 CDS
T04124
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106335122
09122 Translation
03013 Nucleocytoplasmic transport
106335122
03015 mRNA surveillance pathway
106335122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106335122
03041 Spliceosome [BR:
boe03041
]
106335122
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106335122
Spliceosome [BR:
boe03041
]
Complex C
Other components
EJC/TREX
106335122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
106335122
NCBI-ProteinID:
XP_013629006
UniProt:
A0A0D3BJI6
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Position
C3:complement(53883835..53886773)
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AA seq
614 aa
AA seq
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MSSSPFPILDNRPIDKWKVTELKEELKRRRLTTQGLKVDLVRRLDDALRAEQQESQSLNT
AATVAANQQAEITNATGGNVTPDQMQTTPVALAEAAFSIDTTLSAAETTPEPTVVKSTTE
ASAAIGTTPPPVVSKPEVNAGGLDDVREVAGLDSSVVDDAKLQEPEFADVKDGVGSGVTA
TDALVADEASNKAQPTDSELEKAATDNQVSVVTGYEVKSDCISTDSVPTNEKMDNEIAAD
DVKLEQNVSKSQEPSTVIGESHPMDVEKVSVGGGVVSDAANAADMTKGNNNNIDAGDSEK
LNLDRSSGDESMEDEPESKQTESVTSHEVVDKSEKNDIVDAGKVETPENKSHPLVVSDKR
KLPGNDQEAVGNNEPVKRQRRWNSGSVKVPEEQATNSVAAPTTTPRSTGLKRDFSRSDSS
VSEDGPKERVVPPSSKEPTDSLRIDRFLRPFTLKAVQELLGKTGNVTSFWMDSIKTHCYV
SYSSVEEAAATREAVYNLQWPTNGGRLLTAEFVGSEEVKAKLEPPPPPQAKPQPQAQAPS
RPPATTLPPPPPLAKAPPVIERLPPPPPLIAEEQEAPIVTLDDLFKKTKAIPRIYYLPLS
DDQVAAKLAANNNK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatcaccttttccaatcttggacaaccgcccaattgacaagtggaaggttacg
gagctgaaggaagagcttaagagacggagactcactacacaaggcttgaaggttgatttg
gttaggcgtcttgatgacgcccttcgtgctgagcaacaagagtctcagagcctcaatact
gctgctactgtggcagcgaatcaacaggctgagattactaatgcaactggaggtaacgtt
acaccagatcagatgcaaaccactcctgttgctctagctgaagcggcattcagcattgac
accactctatctgcagctgagacaactccagaaccaactgtggttaagtcaacaactgaa
gcatcggctgcgattgggacaacgccacctccggtggtttctaaaccagaggttaacgct
ggtggccttgatgatgttagagaagtagctggtcttgatagttcagtggttgatgatgcg
aagctacaagagcctgagtttgcagatgtgaaagatggagtgggatctggtgtgactgca
actgatgcactagttgctgatgaggcgtctaataaggcccaacctacagattcggagctt
gaaaaagctgctacggacaaccaggtatctgttgttacagggtatgaggtaaaatctgat
tgtatttctactgattctgtgccaactaatgaaaaaatggataacgaaattgctgctgat
gatgtcaaattagaacaaaatgttagtaagtcccaagagccatcaacagtcattggtgaa
tcgcatccaatggatgtcgagaaggtttctgttggaggtggagttgtcagtgatgctgct
aatgcagcagatatgaccaaaggaaataataataatatcgatgcaggcgactcagagaag
ttgaatttagatagaagttctggtgatgaatctatggaggatgagcctgagtccaagcaa
accgaatcagttacatctcatgaagtggtggataagtctgagaaaaacgatattgtggat
gctgggaaagtggaaacccctgaaaacaaaagccatccacttgtggtatctgacaagaga
aagcttcctggtaatgatcaagaagctgttggaaacaatgagcctgtgaaaaggcaacgc
agatggaactctgggagtgttaaagttcctgaagaacaggccactaatagcgtggcggca
cccactacaacaccgaggtcaactggtctgaagcgtgacttctcccgttctgactcttcg
gttagtgaggatggacccaaggaacgtgtggttcctccatcgtcgaaggagcctacggat
tccctgaggattgatcgtttccttaggccgttcacactgaaagctgttcaagagcttctg
ggcaaaactggaaacgtcactagtttctggatggacagcattaagacccactgctatgta
tcttattcttcagttgaagaagcggcagcaacaagagaagcagtgtataacctccagtgg
cctaccaacggaggccgccttctgacagctgaatttgttggatcagaagaagtgaaggcg
aaactggaacctcctcctcctcctcaggctaagcctcagccacaggctcaggctccttct
cgcccaccagcaactactttgccaccaccaccgcctttggcaaaagcacctccagtcatt
gaacgtcttcctccgccacctcctctaattgctgaggaacaagaggctcccatagtcaca
ctggatgatcttttcaagaagacaaaagctatccccaggatatattacttgcccttgtca
gatgaccaagttgcagctaaacttgcggctaataacaacaagtga
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