Brassica oleracea (wild cabbage): 106335151
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Entry
106335151 CDS
T04124
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03015
mRNA surveillance pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106335151
09123 Folding, sorting and degradation
03018 RNA degradation
106335151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106335151
03041 Spliceosome [BR:
boe03041
]
106335151
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106335151
mRNA cycle factors
Stress granule specific factors
106335151
Spliceosome [BR:
boe03041
]
Complex C
Other components
Complex C specific factors
106335151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_10
RBD_DEAH11
RRM_5
RRM_Nup35
RRM_7
Motif
Other DBs
NCBI-GeneID:
106335151
NCBI-ProteinID:
XP_013629045
UniProt:
A0A0D3BDS4
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Position
C3:32610557..32614358
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AA seq
614 aa
AA seq
DB search
MAQSQTPNGSVLPVGLGAAGAQFGTTSLYVGDLDASVTDSQLFDAFSQMGQVVSVRVCRD
LATRRSLGYGYVNFTTPQDAARAIQELNYISLNGKPVRVMYSHRDPSVRRSGAGNIFIKN
LDKSIDHKALHDTFSAFGNIISCKVALDSSGQSKGYGFVQYETEESAQRATAELNGMLLN
DKQVYVGPFLRRQERDSNTAANVTKFTNVYVKNLAESTTDEDLKSAFGEFGEITSAVVMR
DGDGKSKGFGFVNFEDAGDAAKAVEGLNGKTFGDKEWYVGRAQKKSERESELKVRYEESL
REAADKFQSCNLYVKNLDESISDEKLKEMFAPCGTVTSSKVMRDTNGISRGAGFVAFSTP
EEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFSQMRPMAMPPAVGPRVQMYPP
GGPRIGQQMFYGQGPPTMIPQQPGFGYQQQLVPGMRPGGAPPMQNFFMPMVQQGQQRPGG
RRPVGIQPQQHQMQPRGRMFRYPQGRGSGDVPGRLPYEMPQHVPIGALATSLANASPEHQ
RTMLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVA
AGGAAEQLSSLNLN
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaagtcaaactccgaacggctctgttctgccggttggtttgggtgcagcgggc
gctcagttcggtacgacgtcgctttacgtcggagatctggatgcgagtgttaccgattcg
cagctttttgatgcgtttagccagatgggtcaagttgtgtcggttcgtgtctgtagagat
ttggctactcggagatccctcggatacggatatgtcaacttcaccactccccaagatgct
gcaagagccatccaggaactgaactacatatctcttaatggcaaacccgtcagggtcatg
tactctcaccgtgatcctagcgttcgccgaagtggcgcaggaaacatattcatcaagaat
ctagacaagtccatagaccacaaagccttgcacgacaccttctccgccttcggaaacatc
atctcctgcaaagtagctctcgattcatcaggccaatccaaaggctacggcttcgtgcaa
tacgaaaccgaggagtctgctcagagagctacggccgaattaaacggcatgctgctgaac
gacaagcaagtctacgtcggacctttcctcaggaggcaagagagagactccaacaccgcc
gctaacgtgacaaaattcaccaacgtgtacgtgaagaatctcgctgagtccaccaccgat
gaggatctaaagagcgctttcggcgagtttggggagatcacgagcgctgtggtgatgaga
gatggggatgggaagtcaaaggggtttgggttcgttaactttgaggatgcgggtgatgct
gctaaggctgtggaaggtcttaacgggaagacgtttggtgataaggagtggtatgttggt
agagcgcagaagaagtctgagagggagagtgagttgaaggttcggtatgaggagagtttg
agggaggctgcggataagtttcagagctgtaacttgtatgttaagaatttggatgagagt
atctctgacgagaaactcaaggagatgtttgcaccttgtggcactgttacatcttccaag
gtgatgagggatactaatggaataagcagaggggctggttttgtagcgttctcgactccc
gaagaagcaaccaaagctatgtcagagatgagtggtaagatgattgaaaacaaacctctc
tatgttgctgttgctcagagaaaggaggacagaagggccagactccaggctcagttttcg
caaatgagaccaatggcgatgccaccagctgttggacctcgtgtgcagatgtatccccct
ggtggtcccagaattggacaacaaatgttctatggtcagggacctcctactatgattcct
caacaacccgggtttggctaccagcagcagctggtccctggaatgagacctggtggggca
ccgccgatgcaaaacttcttcatgccaatggttcagcagggccagcaacgtcctggaggg
agacgccctgtagggatccagcctcagcagcaccagatgcagccgagggggcgaatgttc
cgctatccgcaaggccgtgggagtggtgatgttcctggaaggcttccatatgagatgcct
cagcatgttcctattggagctttggctacatcccttgccaatgcttctcctgaacaccaa
aggacgatgctgggtgagaatctgtatccgcttgtggagcagctagaggcagagtctgca
gccaaagtgactgggatgcttttggagatggatcagactgaagtgctccatctcttggag
tcacctgaagctctcaaggctaaagtagccgaggctatggacgttctcagaaatgttgct
gctggtggtgcagctgagcagctttcctccttgaacctcaactga
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