Brassica oleracea (wild cabbage): 106335183
Help
Entry
106335183 CDS
T04124
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106335183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106335183
03009 Ribosome biogenesis [BR:
boe03009
]
106335183
Enzymes [BR:
boe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106335183
Spliceosome [BR:
boe03041
]
Complex A
U2 snRNP components
U2 related factors
106335183
Complex B
106335183
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106335183
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
90S particles
Helicases
106335183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ABC_tran
nSTAND3
T2SSE
SRP54
AAA_7
AAA_30
UvrD-helicase
SLFN-g3_helicase
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
106335183
NCBI-ProteinID:
XP_013629086
LinkDB
All DBs
Position
C3:complement(15889875..15893052)
Genome browser
AA seq
729 aa
AA seq
DB search
MGTERKRKVSLFDVMEDPSAKNNKSNVLGGASAAAAGISNLINKWNGKPYSQRYYDILEK
RRDLPVWLQKDEFLRTLQSNQTLILVGETGSGKTTQIPQFVLDAVEAENTNKHKKWLVGC
TQPRRVAAMSVSRRVADEMDVAIGEEVGYSIRFEDCSGPRTMLKYLTDGMLLREAMADPL
LERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLM
KVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDVLVFLTGEEEIEDACRKINK
EVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPLTEGGPAGRKIVVSTNIAETSLTI
DGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSF
NNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNLTRTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSGVGGIGNLPNCFVRPREAQKA
ADEAKSKFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMS
RFNLKMCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTTRNFIRTVTDVRGDWLVDVAPHYYDLSNFPNCEAKRVLEKLYKKRER
ERNESKGRK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagcggaaggttagtttgttcgacgttatggaagatccatcggcg
aagaacaacaaatccaacgttctcggaggtgcgtcagcggcggctgcgggtatcagcaat
ctgattaacaagtggaacgggaagccttactcgcagaggtactacgatattctcgagaag
aggagagatcttcccgtttggctgcagaaagatgagtttctccggacgttgcaatctaac
cagaccctgatcctcgtcggtgagactgggagtggtaaaactactcagattccacagttt
gttttagatgccgttgaggctgagaacacaaataagcataagaaatggttagttggctgc
acgcagcctcgtagagtcgctgcaatgtctgtttctcgtcgtgtagctgatgaaatggat
gttgccattggagaagaagtcggttacagcatccgttttgaggactgtagtggccctcgt
actatgctcaaatatttgactgatggtatgctgttgagagaggcaatggcggatccgctt
cttgagagatacaaagttattattctcgacgaagctcacgagagaactttggctactgat
gttctctttggtcttctcaaagaggttttgaggaacagacctgaccttaagctagttgtg
atgagtgcaaccttggaagctgaaaagtttcaggagtattttagcggtgctcctcttatg
aaagtccctggtaggcttcatccggttgagatattctacacacaggatcctgagagggac
tatcttgaagctgcgataaggaccgttgttcagatacatatgtgcgagccgcctggagat
gttcttgttttcttaactggagaggaggagattgaagatgcctgccgtaaaatcaataaa
gaggtcagtaaccttggagatcaagtggggcctgtcaaagttgtgcctctgtattctact
ctcccacctgctatgcagcagaagatttttgaccctgcaccagagccgttaacagaaggt
ggtcctgctggtagaaagatcgttgtctcaaccaacatcgctgaaacgtctttaaccatt
gatgggattgtttatgttattgaccctggttttgccaagcaaaaagtctataacccacgg
atccgcgttgagtcgttgttggtgtccccaatttcaaaggcaagtgctcaccagaggtca
ggtcgtgctggtagaactcgccccggaaaatgtttcaggctttacacagagaagagtttc
aacaatgatctgcagccgcagacgtatcctgagattttgagatctaatcttgctaatact
gtcctgacattgaaaaagttgggtatagacgacttggtgcactttgatttcatggaccct
cctgctcctgagacattgatgagagcattagaggttttgaattatctgggagcattggat
gatgaaggtaacttgacaaggactggcgagataatgagtgagtttcccttggatccacag
atgtcaaagatgctcattgtcagccctgagttcaactgttcaaatgagattctctcaggg
gtggggggaatcggcaatttaccgaattgctttgttcggcctagagaggctcaaaaagca
gcagatgaagctaaatctaaatttggacacattgatggagatcacctgacgctgctgaac
gtgtaccacgcctacaagcaaaacaatgaagacccaaactggtgttttgagaactttgtc
aacaatagagcaatgaagtctgcagacaatgtgaggcagcagctagtgagaataatgtcg
aggtttaatctcaagatgtgtagcacggatttcaacagtcgtgactactacgtcaatatc
agaaaggccatgctgtctggttatttcatgcaggtggctcacctagaacgcactggccat
tacttgaccgtcaaagataaccaagtggttcacttgcatccatccaattgcctggatcac
aaaccggagtgggtgatttataatgaatatgtcttgactactcgcaatttcattcgcact
gttacagatgtccgcggtgactggttagtagatgttgcaccgcattactatgatctttcc
aacttccccaattgtgaagcaaaaagagtccttgagaagctttacaagaagagagagagg
gaaaggaacgagagcaagggtcgaaagtga
DBGET
integrated database retrieval system
