KEGG   Brassica oleracea (wild cabbage): 106335185
Entry
106335185         CDS       T04124                                 
Name
(RefSeq) histone-binding protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03082  ATP-dependent chromatin remodeling
boe03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    106335185
   03083 Polycomb repressive complex
    106335185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:boe03036]
    106335185
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     106335185
  Histone modification proteins
   HAT complexes
    HATB complex
     106335185
   HDAC complexes
    Sin3A-HDAC complex
     106335185
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     106335185
    PRC2.2
     106335185
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     106335185
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    106335185
  Chromatin remodeling factors
   NuRD complex
    106335185
   NuRF complex
    106335185
   NuRF complex (fruit fly)
    106335185
SSDB
Motif
Pfam: CAF1C_H4-bd WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st EIF3I Beta-prop_EML WD40_RFWD3 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 eIF2A Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_RIG_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_SPT8 MIOS_WD40
Other DBs
NCBI-GeneID: 106335185
NCBI-ProteinID: XP_013629089
LinkDB
Position
C3:complement(6368858..6370816)
AA seq 424 aa
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPPGKD
YSVQKMILGTHTSENEPNYLMIAQVQLPLDDTESEARQYDDERSEFGGFGCATGKVQIIQ
QINHEGEVNRARYMPQNPFVIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSSE
GYGLSWSKFKAGHLLSGSDDAQICLWDINATPKNKVIDAQQIFKAHEGVVEDVAWHMSHE
HLFGSVGDDQYLLIWDLRSPSASKPIQSVVAHSMEVNCLAFNPINEWVVATGSTDKTVKL
FDLRKLTSALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTAEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDAPGEEP
IKGS
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggggaaagacgaagaggagatgcgaggagagatcgaggagcgtctaatcaacgaagag
tacaagatctggaaaaagaacactcctttcctctacgatctcgtcatcactcacgccctc
gagtggccttccctcaccgtcgaatggctccccgaccgcgacgagcctcccggcaaagac
tactccgtccagaagatgattctcggcacccacacttccgagaacgaacccaattacctc
atgatagctcaggttcagcttcccctcgacgacaccgagagcgaagctcgtcagtacgac
gacgaacgctctgagtttggtgggtttggctgcgccaccggaaaggttcaaattatccag
cagataaatcacgaaggggaggtgaaccgagctcggtacatgcctcagaacccttttgtg
attgctaccaagacggttaatgcggaggtgtatgtgtttgattacagcaagcacccatct
aagccgccgcttgatggagcttgcaaccctgatttgaggctgagaggtcacagctctgag
gggtatggtttgtcttggagtaagttcaaggcgggtcatttgcttagtgggtctgatgac
gctcagatctgcttgtgggatatcaacgctactcctaaaaacaaggtcattgatgctcag
cagatctttaaggctcatgaaggggtcgtggaagatgttgcatggcatatgagtcatgaa
cacctgtttggatccgttggagatgatcagtaccttcttatatgggatctgcgttctcca
tctgccagtaagccaatacagtctgtggttgctcactccatggaggttaactgtttagcc
ttcaatccaatcaatgagtgggttgtagcaacagggtcaactgataagactgttaaatta
ttcgatctacggaagcttaccagcgctcttcacacgtttgatagccataaagaggaggtt
ttccaagttggatggaacccgaagaacgagactatcttagcctcatgctgccttggtaga
aggcttatggtttgggaccttagcaggatcgacgaggagcagacagcagaggatgcagag
gacggtccaccggagctgctgtttatccatggcggccacaccagcaaaatatcagatttc
tcgtggaacccatgtgaagattgggttatttccagtgtagctgaggacaacatactccaa
atatggcaaatggctgagaacatttatcatgacgaggatgatgctccaggggaagaacca
ataaaaggttcttag

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