KEGG T04124: 106335261

Brassica oleracea (wild cabbage): 106335261

Entry

106335261         CDS       T04124

Name

(RefSeq) probable CCR4-associated factor 1 homolog 10

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

boe Brassica oleracea (wild cabbage)

Pathway

boe03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:boe00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106335261
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106335261
Messenger RNA biogenesis [BR:boe03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106335261
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106335261

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

106335261

NCBI-ProteinID:

XP_013629192

UniProt:

A0A0D3B0K1

LinkDB

Position

C3:2392217..2393544

AA seq 277 aa
MAETLKEDSITIREVWNDNLLEEFALIREIVDKFTYVAMDTEFPGVVLKPVETFKHNNDL
NYRTLKENVDLLKLIQVGLTFSDEDGNLPTCGTDKFCVWQFNFREFNIGEDIYASESIEL
LRQCGIDFKKNVESGIDVARFGELMMSSGIVLNDSISWVTFHGGYDFGYLVKLLTCKELP
AKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGVCHQAGSDSLLTL
GSFRKLKERYFPGSTERYTGVLYGLGVEDGGGTNVAN

NT seq 834 nt +upstreamnt +downstreamnt
atggcggagactctcaaagaagactcaatcacgattcgcgaggtctggaacgacaacctc
ctcgaggaattcgcgctaatccgtgagatcgtcgacaaattcacctacgtcgcgatggac
acggagttccccggcgtggtcctcaagcccgtcgagaccttcaagcacaacaacgacctc
aactaccgcaccctcaaggagaacgtcgacctcctcaagctcatccaagtcggcctcacc
ttctccgacgaggacggcaacctccccacctgcggcaccgacaagttctgcgtctggcag
ttcaacttccgcgagttcaacataggtgaagacatctacgcgagcgagtccatcgagctt
ctccgccagtgcgggatcgatttcaagaagaacgtcgagagcgggatcgacgtggctcgc
ttcggggagctcatgatgtcgtctgggattgtgttgaacgattccatctcgtgggttact
tttcacggaggttatgattttggttatttggtgaagctgctgacgtgtaaggagctgccg
gccaagcaggcggatttcttcaagctgttgtatgtgtacttccccacggtgtacgatatc
aagcacttgatgacgttctgcaacgggctgtttggagggttgaacaggcttgcggagctt
atgggtgtggagagagttggggtttgtcatcaggcggggtcggatagcttgcttacgttg
gggtcgtttaggaagcttaaggagcggtatttccctggttcgactgagagatacactggt
gttctgtatggtctaggtgtggaagatggtggtggtactaatgttgctaattaa

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