Brassica oleracea (wild cabbage): 106335377
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Entry
106335377 CDS
T04124
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106335377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106335377
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106335377
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ApoL
DUF2465
DUF6437
Motif
Other DBs
NCBI-GeneID:
106335377
NCBI-ProteinID:
XP_013629343
UniProt:
A0A0D3BBZ6
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Position
C3:complement(27710599..27714772)
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AA seq
937 aa
AA seq
DB search
MEGNFEETNKLPELKLDAKQAQGFLSFFKTLPNDSRAVRFFDRKDYYTAHGENSVFIAQT
YYHTTTALRQIGSGANALSSVSISKNMFETIVRDLLLERNDHTVELYEGSGSNWRLVKAG
SPGNIGSFEDVLFANNEMQDTPVVVSLFLSFQESRCVVGMAYVDLTRRVLGLAEFLDDSR
FTNLESSLVAIGAKECIFPAESGKSNECKSLYESLERCGVMTTERSRQEFKGRDLESDLK
RLVKGNIEPVRDLISGFELATPALGALLSFSELLSDEGNYGNFTIRRYDISGFMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEITMRLDIVQCF
VEEAGLRQDLRQHLKRISDVERLVRSLERRRGGLQHIIKLYQSTIRLPFIKTSLKQYTGE
FSSLISKRYIKRLEALSDADHLGKFIDLVEYSVDLDQLENGEYMISSSYDATLSSLKDQK
ELLEQQIHELHKKTAIELDLPVDKALKLDKAAQYGHVFRITKKEEPKIRKKLTTQFLVLE
TRKDGVKFTNTKLKKLGDQYQSVVEDYKSCQKELVDRVVQTVASFSEVFEELAGMLSEMD
VLLSFADLAASCPTPYCRPEVTSSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGESW
FQIITGPNMGGKSTFIRQVGVTVLMAQVGSFVPCDKASVSIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKKAPTLFATH
FHELTALAQANSEVAGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSPPSIVINNEESGKRKSREDDAEEVSRGAARAHKFLKEFA
EMPLDKMELKDSLKRLHELKEELEKDDVGCHWLKQFL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtaacttcgaggagacgaacaagcttccggagcttaaattagatgctaagcaa
gctcaagggtttctctctttcttcaaaaccctaccaaatgactcgagagctgttaggttc
tttgatcgcaaggattattacacagctcatggggagaactcagttttcattgctcagact
tattaccatacaaccactgctctacgccagattgggagtggagcaaacgctctttcgagc
gtcagcattagtaagaacatgtttgaaaccatcgtcagggatcttctcctggagaggaac
gaccataccgtggagctttacgaaggaagcgggtcgaattggaggcttgtgaaagcaggc
tctcctggaaacattggtagcttcgaagatgttttgtttgcaaacaacgagatgcaggac
acgccggttgttgtctccttgtttctgagttttcaggagagcagatgcgttgtagggatg
gcttacgttgatctcacaaggagggttcttggactagctgagtttcttgatgatagccgt
ttcactaacctggagtcttctctcgttgctataggcgcgaaagaatgcatctttccagct
gagtctggcaaatccaatgaatgcaagagtttgtatgagtctcttgagaggtgtggtgtg
atgacaacagagagaagtcgtcaggagtttaaaggaagagatttagagtcagatctaaag
aggttggtgaaggggaacattgagcctgttagagatttaatctctgggtttgagcttgcc
acccctgctcttggtgcattactctccttctctgaacttctctcggacgagggtaactat
gggaacttcacaatacgcagatacgacatcagcggattcatgagactcgactctgcagct
atgagggcgctgaatgtgatggagagcaaaactgacgcaaacaagaatttcagtttgttt
ggtcttatgaacagaacatgcaccgcagggatggggaagagactgcttcacatgtggctc
aagcagcctctcgtggatttgaatgagattacgatgaggctagatatagttcagtgcttc
gttgaagaagctgggttaagacaagatcttagacagcatctgaagcgcatctcagatgtt
gagaggcttgtccggagtctcgagagaagacgaggcggtttacagcacattatcaaactc
tatcagtcaactataaggcttcccttcatcaaaacatcactgaaacagtacaccggagag
ttctcatcactcatcagcaaaagatacatcaaaaggcttgaggccttatcagacgcagat
cacctcggcaagttcattgatctggtagagtactctgtagaccttgaccagctagagaac
ggagagtacatgatctcctcaagctacgatgccacgttatcatctctcaaagatcagaaa
gagttgctggagcagcagatacacgaactgcacaaaaagacagctatagaactcgatctt
ccggtggacaaggccttgaaactcgacaaagcagcgcagtatgggcatgtgttcaggatc
acgaagaaggaagagcctaagatcaggaagaagctgacgacgcagttcttggtgctggag
actcgcaaagacggagtgaagtttacgaacacaaagcttaagaaacttggggaccagtac
caaagtgttgtggaggattataagagctgtcaaaaggagctcgttgatcgtgttgttcag
actgttgccagcttctccgaggtgtttgaggagctagcagggatgctctctgagatggat
gttttgctaagctttgctgatttggctgcaagttgccctacaccatactgtagaccagaa
gtcacctcttcggatgttggagacattgtgctagaaggaagcagacatccatgcgtagaa
gctcaagattgggtgaactttataccaaatgattgtagacttatgagaggggagagttgg
tttcaaataataacgggacctaacatgggagggaagtccactttcattcgccaagttggt
gtgactgttctgatggctcaagttggttcctttgttccttgtgataaagcttcagtttcc
atcagagactgtatctttgcccgtgtaggagcaggcgattgtcaactgcgtggagtgtct
actttcatgcaagaaatgcttgaaactgcttcgattttaaaaggagctactgataaatca
ctgataataatcgatgaattgggccgtggaacatcaacctatgatggttttggtctagca
tgggctatatgtgagcatctggttcaagtgaagaaagcccctactctgtttgctactcac
ttccatgaacttactgccttggctcaagcgaactctgaagttgcaggtaataccgttggt
gttgcaaacttccatgttagcgcgcacattgacacagaaagccgcaaactcaccatgctt
tacaaggttgaaccaggggcatgtgaccagagctttgggatccatgtggctgagtttgcc
aacttcccagaaagcgtagttgcgctcgcaagggagaaagctgccgaactagaagatttc
tctccaccttccatagttatcaacaatgaggagagtgggaagagaaagagcagagaagat
gatgcagaggaagtatcaagaggggcagcacgagctcacaagtttctgaaagaattcgca
gagatgccacttgataaaatggagctaaaagattcacttaaacgcctacatgagctgaaa
gaagagctagagaaagatgacgtgggctgccactggctcaagcagttcctctga
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